|
Prof. Yi-Ping Phoebe Chen
-
Publications by Year [Listing
at DBLP] [Listing
at PubMed Medline Page] [Google
Scholar] |
|
2012 |
Journals:
178. Kalyaanamoorthy, S.
CHEN YPP,
Exploring Inhibitor Release Pathways in Histone Deacetylase Using Random
Acceleration Molecular Dynamics Simulation, Journal of
Chemical Information and Modeling, 52 (2): 589–603, 2012.
177. Lee CC, Lo WC, Lai
SM, CHEN YPP, Tang CY and Lyu PC,
Metabolic classification of
microbial genomes using functional probes, BMC Genomics,
2012, 13:157.
176.
ZHU W., HOU J., and CHEN YPP,
Exploiting Multi-Layered Information to Iteratively Predict Protein
Functions, Mathematical Biosciences, 236 (2): 108–116,
2012.
175. SONG
X., CHENG L, ZHOU T., GUO X., ZHANG X., CHEN YPP, HAN P., SHA J.
Predicting miRNA-mediated gene silencing mode based on miRNA-target
duplex features, Computers in Biology and Medicine,
42(1): 1–7, 2012.
174. CHEN Q, CHEN YPP, Mining Inhibition Pathways for Protein
Kinases on Skeletal Muscle. IEEE Intelligent Systems, in
press.
173. NGUYEN,
T;
ZHEN H,
CHEN YPP,
SeTPR*-tree: Efficient Buffering for
Spatiotemporal Indexes Via Shared Execution,
The Computer Journal,
in press.
172.
Rajasekaran R, CHEN YPP, Probing the structure of Leishmania
major DHFR TS and structure based virtual screening of peptide library
for the identification of anti-leishmanial leads, Journal of
Molecular Modeling, in press.
Refereed
conference papers:
171.
BEGLEY S, ZHEN H, CHEN YPP (2012) “MCJoin: A memory-constrained
join for column-based main-memory databases”, The ACM 39th International
Conference on Management of Data, ACM SIGMOD 2012
(accepted as a full paper)
170. Y. Gotoh, T. Yoshihisa,
H. Taniguchi, M. Kanazawa, W. Rahayu, and YPP CHEN "A Scheduling
Method for Node Relay-based Webcast Considering Reconnection'' 26th IEEE
International Conference on Advanced Information Networking and
Applications (AINA-2012), pp.**-**, Fukuoka, Japan, (Mar. 2012), to
appear.
|
|
2011 |
Journals:
169. CHEN Q, CHEN YPP (2011)
Modeling Conserved Structure Patterns for
Functional Noncoding RNA. IEEE Transactions on Biomedical
Engineering, 58(6):1528-1533, 2011.
168. CHEN Q, LI G, CHEN YPP (2011)
Interval-Based Distance Function for
Identifying RNA Structure Candidates, Journal of Theoretical
Biology, 269(8): 280-286, 2011.
167. YANG
L, ZHEN H, CHEN YPP, NGUYEN T,
External Sorting on Flash Memory
Via Natural Page Run Generation, The Computer Journal,
54(11): 1882-1990, 2011.
166. YUAN Y, CHEN YPP,
NI S, XU AG, TANG L, VINGRON M, SOMEL M, KHAITOVICH P,
Development and application of a modified dynamic time warping algorithm
(DTW-S) to analyses of primate brain expression time series,
BMC Bioinformatics, 2011,12:347.
165. KALYAANAMOORTHY S,
CHEN YPP*,
Structure-based drug design to augment hit discovery, Drug
Discovery Today, 16(17-18): 831-839, 2011.
164. XI Y, CHEN YPP,
QIAN C., WANG F
(2011),
Comparative study of computational methods to detect the correlated
reaction sets in biochemical networks, Briefings in
Bioinformatics
12(2): 132-150, 2011.
163. NAHAR J., TICKLE, KS, ALI
S. CHEN YPP* (2011),
Significant Cancer Prevention Factor Extraction: An
Association Rule Discovery Approach, Journal of Medical Systems
35(3): 353-367, 2011.
162. CHEN Q, CHEN YPP (2011). Mining Protein Kinase Regulation using
Graphical Models. IEEE Transactions on NanoBioscience,
10(1):1-8, 2011.
161.
SONG XF, HAN P, CHEN YPP
(2011)
Genetic
variation of the hemagglutinin of H9N2 influenza viruses, Journal of
Medical Virology, 83(5):838-46, 2011.
160. CHEN
Q, CHEN YPP (2011),
Function Annotation for Pseudoknot using Structure
Similarity. IEEE/ACM Transactions on Computational Biology and
Bioinformatics, 2011 Nov-Dec ; 8(6):1535-1544.
159.
WANG TT, CHEN F. CHEN YPP (2010)
Ranking
Inter-Relationships between Clusters, International Journal of
Systems Science, 42(12):2071-2083, 2011.
158. KNAPP K. CHEN
YPP*, Highly Variant Free Energy Levels in POEM Exons, Current
Bioinformatics (Accepted).
|
|
2010 |
Journals:
157. CHEN
F, CHEN YPP (2010)
Exploring Cross-species Related miRNAs Based
on Sequence and Secondary Structure, IEEE Transactions on
Biomedical Engineering 57(7) 1547 – 1553, 2010.
156.
CHEN Q. CHEN YPP* (2010)
Mining Characteristic Relations Bind to RNA
Secondary Structures, IEEE Transactions on Information Technology in
Biomedicine,
14(1):10-15,
2010.
155.
ZHU W., HOU J., and CHEN YPP (2010)
Semantic and layered protein
function prediction from PPI networks, Journal of Theoretical Biology,
267(2): 129-136.
154. MANN S. CHEN YPP* (2010)
Bacterial genomic G+C composition-eliciting environmental adaptation, Genomics,
95(1): 7-15,
2010.
153.
MANN S, LI J, CHEN
YPP* (2010)
Insights into Bacterial Genome
Composition through Variable Target GC Content Profiling,
Journal of Computational Biology,
17(1): 79-96, 2010.
152. CHEN
F, CHEN YPP (2010)
Exploring the ncRNA-ncRNA patterns based on
bridging rules. Journal of Biomedical Informatics 43(4): 569-577 (2010)
151. JIANG D, ZHOU
S, LIU H, CHEN YPP* (2010)
Inferring minimal
feasible metabolic networks of Escherichia coli, Applied
Biochemistry and Biotechnology,
160( 1): 222-231, 2010.
150. TJONDRONEGORO, D., CHEN YPP*,
Knowledge-discounted Event
Detection in Sports Video, IEEE Transactions on Systems Man &
Cybernetics, Part A. 40(5):1009-1024, 2010.
149. AN
J, CHOI
KP,
WELLS CA, CHEN YPP* (2010), Identifying co-regulating microRNA Groups,
Journal of Bioinformatics and Computational Biology.
8(1):99-115, 2010.
148. Sajjanhar A, Lu G, Zhang
D, Hou J, Zhou w, CHEN YPP* (2010), Spectral Shape Descriptor
using Spherical Harmonics, Integrated Computer-Aided Engineering
17 (2010) 1–7.
147. ZHANG Z, CHEN YPP
(2010) Guest Editors' Introduction. International Journal of Software
Engineering and Knowledge Engineering 20(8): 1043-1044 (2010)
Book Chapter
146. CHEN F, CHEN YPP* (2010),
Pattern recognition for genomics context, Pattern Recognition and
Machine Vision, Chapter 7, editor by Patrick S.P. Wang, River Publishers.
105-118.
145.CHEN YPP, IVANOVA E, CARLONI P,
WANG F (2010), Bioinformatics and its applications, in Comprehensive
Natural Products II: Chemistry and Biology, Eds., Lewis N. Mander and
Hung-wen (Ben) Liu, pp569-593 (Elsevier, 2010).
|
|
2009 |
Journals:
144. CHEN Q. CHEN YPP*
(2009)
Discovery of Structural and Functional Features in RNA Pseudoknots,
IEEE Transactions on Knowledge and Data Engineering,
21(7):974-984, 2009.
143. XI Y, CHEN
YPP, CAO M, WANG W
and WANG F (2009)
Analysis on relationship between
extreme pathways and correlated reaction sets. BMC Bioinformatics
2009, 10(S1):S58.
143. JIANG D, ZHOU S,
CHEN YPP* (2009)
Compensatory ability to null mutation in metabolic networks,
Biotechnology and Bioengineering,
103(2):361-369, 2009.
142.
SONG XF, CHEN WM, CHEN
YPP, JIANG B (2009)
Candidate
Working Set Strategy based SMO Algorithm in Support Vector Machine,
Information Processing & Management
45(5): 584-592, 2009.
141. RONG J, LI G,
CHEN YPP* (2009)
Acoustic Feature Selection for Automatic Emotion Recognition from Speech.
Information Processing & Management,
45(3):315-328,
2009.
140.
AN
J, CHEN YPP* (2009)
Finding Coverage Using Incremental Attribute Combinations,
International Journal of Innovative Computing, Information and Control,
5(5):1419-1428,
2009.
139.
AN
J, CHEN YPP* (2009)
Finding
rule groups to classify high dimensional gene expression datasets,
Computational Biology and Chemistry 33(1):108-113,
2009.
Book Chapters
138. CHEN YPP, RONG J,
LI G (2009) Advanced Graph Mining Methods for
Protein Analysis. Biological Data Mining. Edited by Jake Y. Chen, Stefano
Lonardi, Chapter 6, Chapman & Hall/CRC Press, 111-132.
Lecture Notes in Computer Science/Artificial Intelligence:
137.
Sajjanhar A,
Lu G, Zhang D, Hou
J, Chen YPP
(2009) Spherical Harmonics and Distance Transform for Image
Representation and Retrieval, E. Corchado and H. Yin
(Eds.), Lecture Notes in Computer Science, Volume 5788, pp. 309-316, 2009.
Refereed
conference papers:
136. LIU
Q, CHEN YPP, LI
J (2009), High functional coherence in k-partite protein cliques of
protein interaction networks, Proceedings of
2009 IEEE International conference on Bioinfomratics and Biomedicine, page
111-117. Washington D.C., USA. 1-4 November 2009.
135. NAHAR J., TICKLE, KS,
ALI S. CHEN YPP (2009),
Early Breast Cancer Identification: Which Way to Go? Microarray or
Image Based Computer Aided Diagnosis!, 2009 Third
International Conference on Network and System Security, pp456-461. 2009.
134. HOU J, CHEN YPP
(2009) Data Pre-Processing for More Effective
Gene Clustering, The 2009 International Joint
Conference on Computational Sciences and
Optimization (CSO 2009),
Sanya, Hainan, China,
April 24-26, 2009.
|
|
2008 |
Journals:
133. CHEN
YPP*, CHEN F (2008)
Using Bioinformatics Techniques for Gene Identification
in Drug Discovery and Development, Current Drug Metabolism,
9(6): 567-573,
2008.
132. KNAPP K, CHONKA A,
and CHEN YPP* (2008)
POEM, a 3-Dimensional Exon Taxonomy and Patterns in
Untranslated Exons, BMC Genomics 2008, 9:428.
131. AN
J, CHEN YPP* (2008)
Finding Edging Genes From Microarray Data, Journal of Biotechnology,
135(3):233-240,
2008.
130.
CHEN YPP*,
CHEN F (2008)
Targets for Drug Discovery using Bioinformatics,
Expert Opinion on Therapeutic Targets, 12(4):
383-389, 2008.
129. TJONDRONEGORO, D.,
CHEN YPP*, JOLY A (2008)
A Scalable and Extensible Segment-Event-Object based Sports Video
Retrieval System,
ACM Transactions on Multimedia Computing, Communications and
Applications, 2008: 4(2):13:1-13:40. [PDF].
128. CHEN Q, ZHANG S.
CHEN YPP* (2008)
Rule-based dependency models for security protocol analysis,
Integrated Computer-Aided Engineering 15 (2008) 369-380.
Books:
127. Il-Yeol Song,
Mario Piattini, Yi-Ping Phoebe Chen, Sven Hartmann, Fabio Grandi, Juan
Trujillo, Andreas L. Opdahl, Fernando Ferri, Patrizia Grifoni, Maria
Chiara Caschera, Colette Rolland, Carson Woo, Camille Salinesi, Esteban
Zimányi, Christophe Claramunt, Flavius Frasincar, Geert-Jan Houben,
Philippe Thiran: Advances in Conceptual Modeling - Challenges and
Opportunities, ER 2008 Workshops CMLSA, ECDM, FP-UML, M2AS, RIGiM, SeCoGIS,
WISM, Barcelona Spain, October 20-23, 2008. Proceedings Springer 2008
Lecture Notes in Computer Science/Artificial Intelligence:
126. SCHMIDT S, LI G,
CHEN YPP (2008) Medical Knowledge Discovery from a Regional Asthma
Dataset (ICIC2008), Lecture Notes in Computer Science 5227: 888-895.
Refereed
conference papers:
125. LUKMAN S, SIM K,
LI J and CHEN YPP
(2008) Interacting Amino Acid Preferences of 3D Pattern Pairs at
the Binding Sites of Transient and Obligate Protein Complexes,
The Sixth Asia Pacific Bioinformatics Conference
(APBC2008), 14-17 January 2008 Kyoto, Japan.
124.
SAJJANHAR A, LU G,
ZHANG D, ZHOU W and
CHEN YPP (2008) Image Retrieval Based On Semantics of
Intra-Region Color Properties, IEEE 8th
International Conference on Computer and Information Technology,
8-11 July 2008, Sydney Australia.
|
|
2007 |
Journals:
123. KNAPP K. CHEN YPP
(2007)
An
Evaluation of Contemporary Hidden Markov Model Genefinders with a
Predicted Exon Taxonomy, Nucleic Acids Research, 2007 35:
317-324. [pdf]
122. MANN S., LI J., CHEN YPP (2007)
A
pHMM-ANN based discriminative approach to promoter identification in
prokaryote genomic contexts, Nucleic Acids Research
2007 35:
e12 1-7. [pdf]
121. CHEN Q,
CHEN YPP
and ZHANG C. (2007)
Detecting Inconsistency in
Biological Molecular Databases using Ontology, Data Mining and
Knowledge Discovery 2007 15:275-296.
[pdf]
120.
AN J.
YU J. X. RATANAMAHATANA C. A.
CHEN YPP. (2007)
A
Dimensionality Reduction Algorithm and Its Application for Interactive
Visualization, Visual Languages and Computing,
Elsevier Science 18 (2007) 48-70. [pdf]
119.
CHEN Y, TIMMS, P and CHEN YPP (2007)
CIDB:
Chlamydia Interactive Database for cross-querying genomics,
transcriptomics and proteomics data, Biomolecular Engineering.
24(6):603-608, 2007.[pdf]
118. NAHAR J., ALI S. CHEN YPP (2007)
Microarray Data Classification Using Automatic SVM Kernel Selection,
DNA and Cell Biology, 26(10):707-712, 2007.
[pdf]
117. NAHAR J.,
CHEN YPP, ALI S.
(2007) Kernel Based Naive Bayes Classifier for Breast Cancer
Prediction, Journal
of Biological Systems, 15(1): 17-25.
Lecture Notes in Computer Science/Artificial Intelligence:
116.
CHEN YPP, QIN Q, CHEN Q (2007) Learning Dependency Model for
AMP-activated Protein Kinase Regulation, Lecture Notes in Artificial
Intelligence, 4798: 221-229.
115.
CHEN Q, ZHANG S. CHEN YPP (2007) Identifying Dependency between
Secure Messages for Protocol Analysis, Lecture Notes in Artificial
Intelligence: 4798: 30-38.
Refereed
conference papers:
114. NAHAR J.,
CHEN YPP, ALI S.(2007) Microarray Classification and Rule Based Cancer Identification,
Proceedings of International Conference on Information and Communication Technology (ICICT
2007) March 7-9, 2007, Dhaka, IEEE, pp 43-46.
113. SUBRAMANIAM C. AN J.,
GUBBI J,
CHEN YPP (2007)
Finding Motifs in miRNA Sequences,
Proceedings of The Sixth
International Conference on Computer and Information Science (ICIS 2007)
11-13 July 2007, Melbourne, Australia. IEEE CS
pp. 507-512.
112. RONG J,
CHEN YPP,
CHOWDHURY M, LI G (2007)
Acoustic Features Extraction for Emotion Recognition,
Proceedings of The Sixth
International Conference on Computer and Information Science (ICIS 2007)
11-13 July 2007, Melbourne, Australia. IEEE CS,
pp. 419-424.
111.
CHEN Q, Zhang C. CHEN, YPP (2007) Probabilistic Reasoning of
Inconsistent Belief in Protocol Analysis,
Proceedings of 2007 International Conference on Intelligent
Systems and Knowledge Engineering (ISKE2007), Chengdu, China.
110.
KNAPP K,
RAHAMAN A, CHEN YPP
(2007) "Non-Quantized Minimum Free Energy in Untranslated Region Exons",
Proceedings of
Computational Structural Bioinformatics Workshop (CSBW)
is held in
conjunction with the IEEE International Conference on Bioinformatics and
Biomedicine (BIBM 2007) IEEE, pp. 32-37.
|
|
2006 |
Journals:
109. CHEN
Q. CHEN YPP(2006)
Mining Frequent Patterns for AMP-activated Protein Kinase Regulation on
Skeletal Muscle, BMC Bioinformatics 7:394.
[pdf]
108.
CHEN YPP, PROMPRAMOTE
S., MAIRE F. (2006) MDSM:
Microarray Database Schema Matching By Using Hungarian Method ,
Information Sciences, Vol 176, pp2771-2790.
[pdf]
107. LOPEZ C., CHEN YPP (2006) Using Object and Trajectory
Analysis to Facilitate Indexing and Retrieval of Video, Knowledge-Based
Systems Journal, Elsevier Science
pp639-646.
[pdf]
106. LAU R. Y.
K., TANG M.,
WONG O.,
MILLINER S. W., CHEN
YPP (2006) An evolutionary learning approach
for adaptive negotiation agents ,
International
Journal of Intelligent Systems, Volume 21, Issue 1 (January 2006)
pp41-72. [pdf]
105. CHEN YPP, HWANG MJ, LEE S.K, WONG L
(2006)
Bioinformatics in Asia Pacific, Asia
Pacific Biotech News, Vol. 10 . No. 24 19.
104.
CHEN YPP , and WONG L. (2006)
Algorithms and Computational Bioinformatics The Journal of
Bioinformatics & Computational Biology.
103. SHI W., ZHOU
W, CHEN YPP (2006)
Statistical Analysis of TATA Box and Its Extensions in the
Promoters of Human Genes, Current Bioinformatics,
Volume 1, Number 3, August 2006, Pp. 337-345.
102. CHEN YPP and CHUA T.-S. (2006) Introduction: Multimedia
Modelling
.
The Visual Computer, (2006) 22: 1–2.
Books:
101. JIANG
T., YANG U.-C., CHEN YPP, and WONG L. Editors.
Proceedings of the 4th Asia-Pacific Bioinformatics Conference, Imperial
College Press, London, February 2006.
Advances in Bioinformatics &
Computational Biology
Vol 3 Feb 2006, by Imperial College Press.
Lecture Notes in Computer Science/Artificial Intelligence:
100. AN J.
CHEN YPP
(2006) A similarity search algorithm to predict protein structures, 10th
International Conference on Knowledge-Based & Intelligent Information &
Engineering Systems (KES2006)
9-11 October 2006,
UK.
Lecture Notes in Computer Science, LNCS 4252 Springer-Verlag, pp. 1305-1312.
[pdf]
99. CHEN Q. CHEN YPP.,
ZHANG C.
and LI L.(2006) Mining Frequent Itemsets for Protein Kinase
Regulation, Lecture Notes in Computer Science, LNCS4099, The 9th Pacific
Rim International Conference on Artificial Intelligence, Springer-Verlag,
pp222-230.
98. CHEN Q.
CHEN YPP., ZHANG C., ZHANG S. (2006) Detecting
Collusion Attacks in Security Protocols,
The Eighth Asia Pacific Web Conference January
(APWeb2006) 16-18, 2006, Harbin, China.
Lecture Notes in Computer Science,
LNCS3841. pp297-306.
Refereed
conference papers:
97. AN J.
CHEN YPP (2006) Finding Rule
Groups to Classify
High Dimensional Gene
Expression Datasets, The
18th International Conference on Pattern Recognition 2006
(ICPR2006)
20 - 24 August 2006, Hong Kong, IEEE CS Press,
pp1196-1199. (Tier A)
96. AN J.
CHEN YPP (2006)
Finding Short Patterns to Classify Text Documents, The
2006 IEEE/WIC/ACM International Conference on Web Intelligence (WI-06) 18 - 22 Dec 2006, Hong Kong, IEEE CS Press.
95.
CHEN YPP, CHEN Q (2006) Analyzing Inconsistency Toward Enhancing
Integration of Biological Molecular Databases, Proceedings of the fourth
Asia-Pacific Bioinformatics Conference (APBC2006) Taipei Taiwan 13-16 Feb
2006, pp197-206.
94. TJONDRONEGORO, D. ,
CHEN YPP (2006)
Using
Decision-Tree to Automatically Construct Learned-Heuristics for Events
Classification in Sports Video .
IEEE International Conference on Multimedia & Expo (ICME2006) IEEE CS
Press, July 9-12, 2006, Toronto, Canada, pp1465-1468.
93. TJONDRONEGORO, D. ,
CHEN YPP (2006)
Towards
Universal and Statistical-Driven Heuristics for Automatic Classification
of Sports Video Events .
the 12th International Multimedia Modelling Conference (MMM2006) IEEE
Press, pp43-50.
92. TJONDRONEGORO, D. ,
CHEN YPP , PHAM B. (2006)
Extensible
Detection and Indexing of Highlight Events in Broadcast Sports Video Towards
Universal and Statistical-Driven Heuristics for Automatic Classification
of Sports Video Events .
The 29th Australasian Computer Science Conference-2006 (ACSC2006) Hobart,
TAS, Australia, pp237-246.
91. AN J.,
CHEN YPP (2006) Depth
First Rule Generation for Text Categorization , Proceedings of The Fourth International Conference on Active Media
Technology (AMT 2006)
June 7-9, 2006,
Brisbane Australia, pp.302-306.
90.
SUBRAMANIAM C. AN J.,
CHEN YPP (2006) Microarray Analysis for Gene Expression that involves Trace
Metals
,
Proceedings of The Fourth International Conference on Active Media
Technology (AMT 2006)
June 7-9, 2006,
Brisbane Australia pp211-216.
89.
MORRISON
D.,
SAIJANHAR A., HOU
J.,
CHEN
YPP
(2005) Providing Real-Time Information Services for Public Bus Commuters
,
Proceedings of The Fourth International Conference on Active Media
Technology (AMT 2006)
June 7-9, 2006,
Brisbane Australia pp384-387.
|
|
2005 |
Journals:
88. AN J., CHEN YPP
CHEN H. (2005)
DDR:
An Index Method for Large Time Series Datasets , Information Systems,
Volume 30, Issue 5, (July 2005) Elsevier Science.
pp333-348. [pdf]
87,
Zhang C., CHEN
YPP,
Zhang S.
CHEN Q
(2005)
Mining
Inconsistent Secure Messages Toward Analyzing Security Protocol,
The International Journal of Intelligent
Control and Systems (IJICS) Volume 10, Number 1, March
2005, pp77- 85.
86.
GARCIA A., CHEN YPP, RAGAN MA (2005)
Information
Integration in Molecular Bioscience,
Applied
Bioinformatics, 2005; 4 (3): 157-173.
85, CHEN YPP
(2005)
Advanced Techniques for Bioinformatics
.
The Journal of Bioinformatics & Computational Biology, Vol. 3, No. 1
(2005) 99-102.
Books:
84. CHEN YPP,
Ed., Bioinformatics
Technologies,
Springer - Jan 2005.
83. CHEN
YPP,
and WONG L. Editors, (2005)
Proceedings of the Third Asia-Pacific
Bioinformatics Conference, Advances in Bioinformatics &
Computational Biology
Vol 1 Jan 2005, by Imperial College Press.
82. CHEN
YPP,
Ed, (2005)
Multimedia
Modelling, Proceedings of the 11th International
Multimedia Modelling Conference, IEEE CS Press.
Book Chapters
81. CHEN YPP
(2005) Introduction to Bioinformatics. Bioinformatics
Technologies, edited by Y.-P. Phoebe CHEN Chapter 1, pages 1-14,
Springer, Jan 2005. pp1-13.
80.
PROMPRAMOTE S., CHEN Y., CHEN YPP
(2005) Machine Learning in Bioinformatics , Bioinformatics Technologies,
edited by Y.-P. Phoebe CHEN Chapter 5, pages 117-154, Springer, Jan 2005,
pp117-153.
79. SHI W., ZHOU W, CHEN YPP (2005) Biological Sequence Assembly and Alignment , Bioinformatics
Technologies, edited by Y.-P. Phoebe CHEN chapter 8, pages 243-262,
Springer, Jan 2005, pp241-261.
78. MANN S,
CHEN YPP (2005) Modeling
for Bioinformatics , Bioinformatics Technologies, edited by Y.-P. Phoebe
CHEN Chapter 9, pages 263-298, Springer, Jan 2005,
pp263-298.
77. TSE B., HUME D.
CHEN YPP (2005) Pattern Matching for Motifs , Bioinformatics Technologies, edited
by Y.-P. Phoebe CHEN Chapter 10, pages 299-312, Springer, Jan 2005,
pp299-312.
76. YU Z.-G., ANH V.
CHEN YPP (2005) Visualization and Fractal Analysis of Biological Sequences ,
Bioinformatics Technologies, edited by Y.-P. Phoebe CHEN Chapter 11,
pages 313-352, Springer, Jan 2005, pp313-351.
75. LIEW A. W.-C., YAN H., YANG M.,
CHEN YPP (2005) Microarray Data Analysis , Bioinformatics
Technologies, edited by Y.-P. Phoebe CHEN Chapter 12, pages 353-388,
Springer, Jan 2005, pp353-388.
Lecture Notes in Computer Science/Artificial Intelligence:
74.
AN J., CHEN YPP,
XU Q. and ZHOU
X., (2005)
A New Indexing Method for High
Dimensional Dataset , Database Systems for Advanced Applications
(DASFAA2005)
Lecture Notes in
Computer Science,
LNCS3453. Springer-Verlag,
pp385-397. (Tier A)
73. TJONDRONEGORO, D. ,
CHEN YPP (2005)
Multi-level Semantic Analysis for Sports Video . Knowledge-Based
Intelligent Information and Engineering Systems
(KES).
Lecture Notes
in Computer Science,
LNCS3682
/ 2005 , Springer pp24-30.
72. AN J.,
CHEN YPP (2005)
Yet
Another Induction Algorithm ,
Knowledge-Based &
Intelligent Information & Engineering Systems (KES)
Lecture Notes
in Computer Science,
LNCS3682
/ 2005 , Springer, pp37-44. [PDF]
71.
CHEN
Q.
CHEN YPP,
(2005)
Analyzing Security Protocols
using Association Rule Mining, The 18th Australian Joint Conference on
Artificial Intelligence, Sydney Australia, 5-9 December 2005,
Lecture Notes in Artificial Intelligence
LNAI3809.
Springer-Verlag, pp 245-253.
Refereed
conference papers:
70. TJONDRONEGORO, D. ,
CHEN YPP and PHAM B. (2005) Extraction and Classification of Self-consumable Sport Video Highlights ,
in Proceedings of
The
ACM MM2005, Singapore. (Tier A+)
69.
GARCIA A., Thoraval S., GARCIA
L.J. , CHEN YPP, RAGAN M. A., (2005)
Bioinformatics
workflows: G-PIPE as an implementation, Fifth workshop on Workflow
Managements: new abailities for the biological information overview, Oct
5-7 2005 Naples, Italy. pp61-64.
68. TJONDRONEGORO, D. ,
CHEN YPP and PHAM B. (2005)
A Statistical-driven Approach for Automatic Classification of Events in
AFL Video Highlights. In Proc. Twenty-Eighth Australasian Computer
Science Conference (ACSC2005) Newcastle, Australia. CRPIT, 38. Estivill-Castro,
V., Ed. ACS. pp209-218.
67.
AN J., CHEN YPP (2005)
Keyword
Extraction for Text Categorization , Proceedings of The
Third International Conference on Active Media
Technology (AMT 2005) May 19-21, 2005,
Takamatsu, Kagawa, Japan, IEEE, pp556-561.
66. TJONDRONEGORO, D. ,
CHEN YPP and PHAM B. (2005) Content-based Video Indexing for Sports Applications using
Integrated Multi-Modal Approach ,
in Proceedings of
The 4th Asia
Pacific International Symposium on Information
Technology,
Jan. 26-27, 2005, Gold Coast, Australia, pp200-203.
65. AN J.,
CHEN YPP SUBRAMANIAM C. (2005)
Side Chain Conformational Preferences in Protein Structures
,
The 2005 International Conference on
Mathematics and Engineering Techniques in
Medicine and Biological Sciences (METMBS '05)
June 20 - 23, 2005, Monte Carlo Resort,
Las Vegas, Nevada, USA.
pp48-52.
64. SAIJANHAR A., HOU J.,
CHEN
YPP
(2005) Content Exploration for e-Learning Using XML Web Services
,
Proceedings of The
Third International Conference on Active Media
Technology (AMT 2005) May 19-21, 2005,
Takamatsu, Kagawa, Japan, IEEE, p266.
63, CHEN Q.
CHEN YPP,
Zhang C., Zhang S. (2005) A Framework for
Merging Inconsistent Beliefs in Security Protocol Analysis, International
Workshop on Data Engineering Issues in E-Commerce (DEEC2005) in
conjunction with ICDE2005 conference Tokyo, Japan, 9 Apr 2005, Tokyo,
Japan, IEEE, pp112-117.
62, PROMPRAMOTE S.,
CHEN YPP(2005)
ANNODA: Tool for integrating Molecular-biological Annotation Data, in
Proceedings of International Workshop on Biomedical Data Engineering
(BMDE2005) in conjunction with ICDE2005, April 3-4, 2005, Tokyo, Japan.
IEEE, pp113-120.
|
|
2004 |
Journals:
61. TJONDRONEGORO, D. ,
CHEN YPP and PHAM B.
(2004)
Integrating Highlights to Play-break Sequences for More
Complete Sport Video Summarization , IEEE Multimedia,
Oct-Dec, 2004, pp22-37.
60. SOON, L., CHEN YPP and
UNDERWOOD, A. (2004)
Knowledge Creation in Export Trading
,
Journal of
Information & Knowledge Management (JIKM) World Scientific Vol. 3 No. 4 .
pp. 297-316.
59. ZHANG, J., PHAM, B and
CHEN YPP (2004) A Fuzzy Shape
Database for Create Design , Control and
Cybernetics, Issue 1/2004, pp. 141-172 .
Books:
58.
CHEN YPP, Editor, (2004)
Bioinformatics 2004,
Proceedings of the
Second Asia-Pacific Bioinformatics Conference, January 2004, Vol 29 in
the Conferences in Research and Practice in Information Technology Series,
published by the Australian Computer Society, in Association with the ACM
Digital Library
57.
CHEN YPP, Editor, (2004)
Multimedia
Modelling, Proceedings of the
10th International
Multimedia Modelling Conference, IEEE CS Press.
Lecture Notes in Computer Science/Artificial Intelligence:
56. AN J.,
CHEN YPP and KEOGH E. (2004)
A Grid-based
Index Method for Time Warping Distance , Web-Age Information
Management, Lecture Notes in Computer Science,
LNCS Vol 3129, Springer-Verlag,
pp65-75. [
55. AN J.,
CHEN YPP and
XU Q. (2004)
Surface
Spatial Index Structure of High-Dimensional Space ,
Intelligent Data Engineering and Automated Learning,
Lecture Notes in Computer Science,
LNCS Vol 3177, Springer-Verlag,
pp272-278.
Refereed
conference papers:
54,
TJONDRONEGORO, D, CHEN YPP and PHAM B. (2004)
The Power of
Play-Break for Automatic Detection and Browsing of Self-consumable Sport
Video Highlights , 6th ACM SIGMM International Workshop on Multimedia
Information Retrieval October 15-16, 2004 (MIR2006), New York, NY USA,
in conjunction with ACM
Multimedia 2004, pp267-274. (Tier
A)
53. MANN S.,
CHEN YPP and EATON L. (2004)
A
Computational Framework for Nucleic Acid Sub-Sequence Identification ,
Proceedings of IEEE Fourth Symposium on Bioinformatics and Bioengineering
(BIBE2004) May 19-21, 2004, Taichung, Taiwan, ROC. IEEE CS Press,
pp467-474.
52. CHEN Y.,
CHEN YPP and
ZHU, J. (2004) Real-Time
Gene-Expression Extraction with Fast Classification (FC) Networks ,
Proceedings of The 2004 International Conference on Machine Learning,
Models, Technologies and Applications (MLMTA'04) June 21-24, 2004,
Las Vegas, Nevada, USA, pp883-889.
51. TJONDRONEGORO, D. ,
CHEN YPP
and PHAM B. (2004) Classification of Self-Consumable Highlights for
Soccer Video Summaries , Proceedings of The 5th IEEE International
Conference on Multimedia and Expo (ICME2004) The Grand Hotel, Taipei,
Taiwan, June 27th – 30th, 2004. IEEE CS Press.
50, WU S.-T., LI Y., XU Y., PHAM B. and
CHEN YPP, (2004) Automatic Pattern-Taxonomy Extraction for Web
Mining , IEEE/WIC/ACM WI-2004, Sep 20-24 2004, Beijing China, IEEE CS
Press, pp242-248.
49, AN J. and CHEN YPP
(2004) Concept Learning of Text Documents , IEEE/WIC/ACM WI-2004, Sep
20-24 2004, Beijing China, IEEE CS Press, pp698-701.
48,
PROMPRAMOTE S., CHEN YPP
(2004) Rough Set Based Similarity Metrics for Mixed Data Set: A Case
Study of Heart Disease Diagnosis , the 7th
International Conference on Information Technology (CIT2004)
12/20/2004 - 12/23/2004, Hyderabad,
Andhra Pradesh, India
(Accepted).
47, GOWARD P. and
CHEN YPP
(2004) Redesign of a Multimedia Course to reflect process not product ,
international conference E-Learn 2004, November 1-5, 2004,
Washington, DC , pp660-665.
46, GOODMAN A. and
CHEN YPP
(2004)
Maintaining
Relevance in a Rapidly Changing Environment: Evolving a Multimedia
Curriculum , Proceedings of 3rd Symposium on IT in Education, Kuala
Lumpur, October 2004, pp9-13.
|
|
2003 |
Journals:
45. CHEN YPP (2003) Biomedical Visualization,
Visual Languages and Computing 14 (4): 295-297 (2003). Elsevier
Science.
44. CHEN YPP (2003)
Data
Mining in Bioinformatics, International Journal of
Software Engineering and Knowledge Engineering, Vol. 13, No. 6 (December
2003). World Scientific.
43. CHEN YPP (2003)
Bioinformatics
in Asia Pacific,
Asia-Pacific
Biotech News, published by World Scientific, Vol. 7, No. 3, 3
February 2003.
42.
CHEN YPP
and COLOMB, B.M. (2003)
Database Technologies for L-system Simulations
in Virtual Plant Applications on Bioinformatics , Knowledge and Information Systems, Volume 5, Number 3 (July 2003)
pp288-314. Springer-Verlag. [PDF]
41.
CHEN YPP
and McLachlan G., (2003)
Bioinformatics Research in Australia,
Asia-Pacific Biotech
News, published
by World Scientific, Vol. 7, No. 3, 3 February 2003.
Books:
40.
CHEN YPP, Editor, (2003)
Bioinformatics
2003, Proceedings of the
First Asia-Pacific
Bioinformatics Conference, February 2003, Vol 19 in the Conferences
in Research and Practice in Information Technology Series, published by
the Australian Computer Society, in Association with the ACM Digital
Library.
Book Chapters:
Lecture Notes in Computer Science/Artificial Intelligence:
39 .
CHEN YPP A Hybrid Framework Using SOM and Fuzzy Theory for Textual
Classification in Data Mining , Modelling with Words, Lecture Notes in
Artificial Intelligence,
J. Lawry, J.
Shanahan and A. Ralescu Eds,
Springer-Verlag, pp153-167.
38.
TJONDRONEGORO, D. , CHEN YPP and PHAM B.
Indexing of Goal
Segments in Soccer Video for Semantic Retrieval , Data Mining from
Multimedia and Complex Data , C. Djeraba, S. J. Simoff, and O. R. Zaiane
(Eds) Springer Verlag.
Refereed
conference papers:
37.
CHEN YPP
(2003) XML-based Multimedia Query Systems ,
Proceedings of the 9th International
Multi-Media Modelling Conference (MMM'03)
7~9
Jan 2003, Taipei, Taiwan, pp.365-378.
ISBN957-9078-57-2.
36. TJONDRONEGORO,
D, CHEN YPP and PHAM B. (2003)
Sports Video Summarization using Highlights
and Play-Breaks, 5th ACM SIGMM
International Workshop on Multimedia Information Retrieval
(MIR2003),
Boston, USA, in conjunction with ACM Multimedia 2003.
(Tier A)
35.
PROMPRAMOTE S., CHEN YPP and MAIRE F. (2003) Information Management for Microarray Experimental Data , 5th IFAC
Symposium on Modelling and Control in Biomedical Systems, IFAC2003,
Elsevier Science, pp377-382.
34.
SOON, L., CHEN YPP and UNDERWOOD, A. (2003)
Explicit
Knowledge in Web-based Export Trading , Proceedings of the AUSWEB
2003, The Ninth Australian World
Wide Web Conference, 5 - 9 July 2003, Gold Coast Queensland
Australia.
33.
LEE F. S. and CHEN YPP(2003) BioWebFinder – Searching
Biological Websites , Proceedings of the
APAC'03, The APAC
Conference and Exhibition on Advanced Computing, Grid Applications and
eResearch, 29 September - 2 October, 2003, Royal Pines Resort Gold
Coast, Queensland Australia.
Poster Sessions in ISMB2003
32.
CHEN YPP (2003) Generating Database Technologies and
Simulations for Branching Structure Applications, Presented in the 11th
International conference on Intelligent Systems for Molecular Biology
(ISMB2003). (Poster Session). Brisbane Australia June 29 to July 3,
2003.
31. AN J., and
CHEN YPP (2003) An Effective Query Method for DNA Sequence, Presented in
the 11th International conference on Intelligent Systems for Molecular
Biology (ISMB2003). (Poster Session). Brisbane Australia June 29 to July
3, 2003.
30. PROMPRAMOTE S., CHEN YPP, MAIRE F. (2003) Integrated Storage for Microarray
Experimental Data, Presented in the 11th International conference on
Intelligent Systems for Molecular Biology (ISMB2003). (Poster Session).
Brisbane Australia June 29 to July 3, 2003.
29. CHEN Y. and
CHEN YPP (2003) BioInfoCallboratory: Towards an Agent-Assisted Web-Based
Collaboration Environment for Bioinformatics, Presented in the 11th
International conference on Intelligent Systems for Molecular Biology
(ISMB2003). (Poster Session). Brisbane Australia June 29 to July 3,
2003.
28. TSE B., WELLS C., RAVASI
T., CHEN YPP, HUME D., (2003) Computational prediction of
macrophage specific regulatory network, Presented in the 11th
International conference on Intelligent Systems for Molecular Biology
(ISMB2003). (Poster Session). Brisbane Australia June 29 to July 3,
2003.
27. GARCIA A., JOHN C., RAGAN
M. A., CHEN YPP. (2003) SEMA, A semantic literature
annotator, Presented in the 11th International conference on
Intelligent Systems for Molecular Biology (ISMB2003). (Win Australian
Best Poster Prize). Brisbane Australia June 29 to July 3, 2003.
26. GARCIA A., LEYLA J. GARCIA
L. J., RAGAN M. A., CHEN YPP (2003) JPIPE, A pipeline
module for JEMBOSS, Presented in the 11th International conference on
Intelligent Systems for Molecular Biology (ISMB2003). (Poster Session).
Brisbane Australia June 29 to July 3, 2003.
25. LEE F.,
CHEN YPP
(2003) BioWebFinder: Searching Biological Websites, Presented in
the 11th International conference on Intelligent Systems for Molecular
Biology (ISMB2003). (Poster Session). Brisbane Australia June 29 to July
3, 2003.
|
|
2002 |
Journals:
24 .CHEN YPP, and HANAN
J. (2002) Partial
Automation of Database Processing of Simulation Outputs from L-systems
Models of Plant Morphogenesis ,
BioSystems. (Journal of
Biological and Information Processing Sciences) 65:187-197
[pdf]
23. TJONDRONEGORO, D. and
CHEN YPP (2002) Content-based
Indexing and Retrieval using MPEG-7 and X-Query in Video Data Management
Systems,
World
Wide Web Journal 2002 5(3):207-227.[pdf]
Refereed
conference papers:
22. RUNQIANG B., CHEN YPP, BURRAGE K., HANAN J., ROOM P., BELWARD
J. (2002)
Derivation
of L-system models from measurements of biological branching structures
using genetic algorithms, Proceedings of the Fifteenth
International Conference on Industrial & Engineering Application of
Artificial Intelligence & Expert Systems, June 17-20, 2002. Cairns,
Australia, Lecture Notes in Artifical Intelligence, pp.514-524,
Springer-Verlag.
[PDF]
21. TJONDRONEGORO, D. and
CHEN YPP
(2002) Content-Based Video Data Management: Key-Segment Extraction,
MPEG-7 Summarisation, and XQUERY Retrieval , Proceedings of
International Workshop on Knowledge Discovery in Multimedia and Complex
Data (KDMCD'02) in conjunction with the Sixth Pacific-Asia Conference on
Knowledge Discovery and Data Mining (PAKDD-02) pp. 39-49. May 6-8,
Taipei Taiwan.
20. ZHANG, J., PHAM, B and
CHEN YPP
(2002) Indexing and Retrieval of Fuzzy Shapes , Fuzzy Logic: a Paradigm
for the New Millennium, Studies in Fuzziness and Soft Computing Volume
No. 81, V. Dimitrov and V. Korotkich, eds., Physica-Verlag, pp240-252.
19. ZHANG, J., PHAM, B and
CHEN YPP
(2002) Modelling and Indexing of Fuzzy Complex Shapes , Proceedings of
the Sixth IFIP Working Conference on Visual Database Systems, Brisbane
Australia, pp.401-415, Kluwer Academic Publishers.
18. SOON, L. and CHEN YPP
(2002) Visualisation of Web-based Australian Export Trading ,
Proceedings of the Sixth IFIP Working Conference on Visual Database
Systems (VDB6) Brisbane, Australia,
pp.281-295, Kluwer Academic Publishers.
17. ZHANG, J., PHAM, B and
CHEN YPP (2002) A Fuzzy Genetic Algorithm for Creative Shape
Design , Proceedings of the Fourth International Symposium on Tools and
Methods of Competitive Engineering. pp.315-329, Wuhan, Hubei, China.
16. Li
X., and CHEN YPP (2002) Automatic Assessment of
e-Businesses , Proceedings of the International Conference on E-Business
2002, pp. 294-299, May 23-26. Beijing, China,
pp294-299.
15.
SOON, L., CHEN YPP and UNDERWOOD, A. (2002)
A
Case Study on Virtual Export Trade Community , Proceedings of the AUSWEB 2002,
The Eighth
Australian World Wide Web Conference, July 6-10. pp. 211-224,
Sunshine Coast Queensland Australia.
|
|
2001 |
14. CHEN YPP (2001) A Practical Approach for Professional
Development Portfolio . TechTrain2001, 5 July - 7 July, 2001, Brisbane,
Australia.
13. GUNTHER, P. and CHEN YPP (2001) A New Approach To
Hybrid SOM Implementations For Text Classification , Proceedings of the
10th International IEEE conference on Fuzzy Systems, IEEE CS Press,
pp.968-972, Melbourne December 2-5 2001. (Tier A)
12. ZHANG, J., PHAM, B and CHEN YPP (2001) Fuzzy Genetic
Algorithms Based on Level Interval Algorithm Proceedings of the 10th
International IEEE conference on Fuzzy Systems, IEEE CS Press.
pp.1424-1428, Melbourne December 2-5 2001. (Tier A)
11. ZHANG, J., PHAM, B and CHEN YPP (2001) Fuzzy Genetic
Algorithms with Fuzzy Solutions , Australian Journal of Intelligent
Information Processing Systems, Vol. 7 No. 1/2, pp. 1-10.
|
|
2000 |
10. CHEN YPP and COLOMB, R.M.
(2000)
Querying
Recursive Structures Without Recursive Queries , the 11th
Australian Database Conference, ADC-2000, IEEE CS Press, 31 January
- 2 February, 2000, Canberra, Australia. pp.21-27.
9.
CHEN YPP (2000) Generating Database Representations
of L-systems in Virtual Plant Applications , PhD Thesis, School of
Computer Science and Electrical Engineering, The University of
Queensland.
8. ZHANG, J., PHAM, B and
CHEN YPP (2000) Indexing and
Information Retrieval of Shape Databases , Fuzzy Logic: a Paradigm for the
New Millennium, Studies in Fuzziness and Soft Computing, V. Dimitrov and
V. Korotkich, eds., Physica-Verlag.
7. ZHANG, J., PHAM, B and CHEN YPP (2000)
Construction of Fuzzy Shape Database, in With Fuzzy Logic in the New
Millennium, V. Dimitrov and V. Korotkich, Eds., pp. 53-54.
|
|
1999 |
6.
CHEN YPP and COLOMB,
R.M. (1999) Generic Process Solution in Database Systems and L-systems for
Bioinformatics Research Proc of The Second International Symposium
on Cooperative Database Systems for Advanced Applications (CODAS'99)
March 27-28, 1999, Wollongong, Australia.
5.
CHEN YPP (1999) DML:
A Bridge between Database Systems and L-Systems for Biological Research ,
The 11th International Conference on Scientific and Statistical Database
Management (SSDBM'99) ACM SIGMOD and VLDB Endowment, IEEE press, July
28-30, 1999, Cleveland, Ohio, U.S.A. (Tier A)
4.
CHEN YPP and COLOMB,
R.M. (1999) Decision Support in Bioninformatics Research ,
Proc: The Fifth International Conference of The International Society
for Decision Support Systems (ISDSS'99) 20-23 July 1999, Melbourne,
Australia.
3. CHEN YPP and COLOMB,
R.M. (1999) Generic Process Solution in Database Systems and L-systems
for Bioinformatics Research , in Zhang Y., Rusinkiewicz M. and Kambayashi
Y. (eds) Cooperative Databases and Applications’99, Springer-Verlag,
pp.328-339.
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|
1997-1998 |
2. CHEN YPP and COLOMB, R.M. (1998) Design: A Visual
Database Development System in B. Verma, Z. Liu, Z. Sattar, R. Surawski
and J. You (eds.) 2nd IEEE International Conference on Intelligent
Processing Systems (ICIPS'98) Gold Coast, Australia 4-7 August,
1998, IEEE CS Press, pp.198-202.
1. COLOMB, R.M. and CHEN YPP (1997) Use of Partial
Functional Dependencies to make Practical Approximate Translations Among
Forms of Propositional Expert Systems in Sattar A. (ed.) Advanced
Topics in Artificial Intelligence, Lecture Notes in Artificial
Intelligence Vol 1342. Springer-Verlag, pp 167-176.
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