Publications

Professor Phoebe Chen

 

 

 

 

 

"The more I learn, the more I realize how much I don't know.”  - Albert Einstein

"It's simply a matter of doing what you do best and not worrying about what the other fellow is going to do." -- John R. Amos

“Happiness depends upon ourselves.” - Aristotle

 

Publications by Year [Listing at PubMed Medline Page][Google Scholar][Scopus Profile][ResearcherID][Microsoft Academic][ORCID][Google Scholar Publications][Listing at DBLP]

2018

Journals:

231. Chiu JKH, Dillon T, Chen YPP (2018), Large-Scale Frequent Stem Pattern Mining in RNA Families, Journal of Theoretical Biology (In Press).

230. Anees A, Chen YPP (2018), Discriminative binary feature learning and quantization in biometric key generationPattern Recognition, 77(2018): 289-305.

229. Kourfariotis L.T., Chen YPP, Stothard P, Hayes BJ (2018) Variance explained by whole genome sequence variants in coding and regulatory genome annotations for six dairy traits, BMC Genomics, (2018) 19:237.

228. Cheng Z,  Zhou S, Wang Y, Liu H, Guan J, Chen YPP (2018), Effectively identifying compound-protein interactions by learning from positive and unlabeled examples, IEEE/ACM Transactions on Computational Biology and Bioinformatics (in press). DOI: 10.1109/TCBB.2016.2570211.

227. Yang SX, Zhen H, Chen YPP (2018), GCOTraj: A Storage Approach for Historical Trajectory Data Sets Using Grid Cells Ordering, Information Sciences, 459 (2018): 1-19.

226. Zhu Y, Xie ZY, Li YZ, Zhu M, Chen YPP (2018), Research on folding diversity in statistical learning methods for RNA secondary structure prediction, International Journal of Biological Sciences, 14(8):872-882, 2018.

Refereed conference papers:

225. Chaudhary C, Goyal P, and Chen YPP (2018), Linguistic patterns and cross modality-based image retrieval for complex queries, ACM ICMR 2018, accepted as a regular paper, ACM International Conference on Multimedia Retrieval, June 11-14, 2018, Yokohama, Japan, pp257-265.

2017

Journals:

224. Ma CY, Chen YPP, Berger B, Liao CS (2017), Identification of Protein Complexes by Integrating Multiple Alignment of Protein Interaction Networks, Bioinformatics, 33(11):1681-1688, 2017.

223. Yang HF, Dillon T, Chen YPP (2017), Optimized Structure of the Traffic Flow Forecasting Model with a Deep Learning ApproachIEEE Transactions on Neural Networks and Learning Systems, 28(10):2371-2381, 2017.

230. Wang T, Chen YPP, Macleod IM, Pryce JE, Goddard EG, Hayes BJ (2017), Application of a Bayesian non-linear Model Hybrid Scheme to Sequence Data for Genomic Prediction and QTL Mapping, BMC Genomics, 18(618):1-23, 2017.

222. Chiu JKH, Chen YPP (2017), A Comprehensive Study of RNA Secondary Structure Alignment Algorithms, Briefings in Bioinformatics, 18(2): 291-305, 2017.

221. Lalbakhsh P, Chen YPP (2017), TACD: a transportable ant colony discrimination model for corporate bankruptcy prediction, Enterprise Information Systems, 11(5): 758-785, 2017.

220. Chen Q, Lan C, Zhao L, Wang J, Chen B, Chen YPP (2017), Recent Advances in Sequence Assembly: Principles and Applications, Briefings in Functional Genomics, 16(6), 2017, 361–378.

Refereed conference papers:

219. Chaudhary C, Goyal P, and Chen YPP (2017), Exploiting Visual and Textual Neighborhood Information to Improve Image-Tag Relevance, 2017 IEEE International Conference on Big Data (Big Data 2017), (Accepted as a regular paper), pp566-575, 18% acceptance rate, December 11-14, 2017, Boston, MA, USA.

2016

Journals:

218. Begley S, Zhen H, Chen YPP (2016), PaMeCo Join: A Parallel Main Memory Compact Hash Join, Information Systems, 58:105-125, 2016.

217. Wang T, Chen YPP, Bowman P, Goddard M, Hayes B (2016), A hybrid expectation maximisation and MCMC sampling algorithm to implement Bayesian mixture model based genomic prediction and QTL mapping, BMC Genomics,  17(1): 1-21, 2016.

216. Yang SX, Zhen H, Chen YPP (2016), Workload-based Ordering of Multi-dimensional Data, IEEE Transactions on Knowledge and Data Engineering, 28(3):831-844, 2016.

215. Chen Q, Chen YPP, Zhang C (2016), Interval-Based Similarity for Classifying Conserved RNA Secondary Structures, IEEE Intelligent Systems, 31(3):78-85, 2016.

214. Chen YPP, Johnson C, Lalbakhsh P, Caelli T, Deng G, Tay D, Erickson S, Broadbridge P, El Refaie A, Doube W,  Morris M. E (2016), Systematic review of virtual speech therapists for speech disorders. Computer Speech & Language ,37:98-128, 2016.

213. Zhang B, Han D, Korostelev Y, Yan Z, Shao N, Khrameeva E, Velichkovsky BM, Chen YPP, Gelfand MS and Khaitovich P (2016), Changes in snoRNA and snRNA abundance in the human, chimpanzee, macaque and, mouse brain, Genome Biology and Evolution, 8(3): 840-850, 2016.

2015

Journals:

212. Chiu JKH, Chen YPP (2015), Pairwise RNA Secondary Structure Alignment with Conserved Stem Pattern, Bioinformatics, 31(24):3914-3921, 2015.

211. Chiu JKH, Chen YPP (2015), Efficient conversion of RNA pseudoknots to knot-free structures using a graphical model, IEEE Transactions on Biomedical Engineering, 62(5), 1265-1271, 2015.

210. Rajasekaran R, Chen YPP (2015), Potential Therapeutic Targets and the Role of Technology in Developing Novel Antileishmanial Drugs, Drug Discovery Today, 20(8): 958-968, 2015.

209. Kourfariotis L, Chen YPP, Chamberlian A, Vanderjagt C, Hayes B (2015), A catalogue of novel bovine long noncoding RNA across 18 tissues, PLoS ONE,  10(10): e0141225. doi:10.1371/journal.pone.0141225, 2015.

208. Chen Q, Luo H, Zhang C, Chen YPP (2015), Bioinformatics in Protein Kinases Regulatory Network and Drug Discovery, Mathematical Biosciences, 262, 147-156, 2015.

207. Wang TT, Chen YPP, Goddard M, Meuwissen T, Kemper KE, Hayes B (2015), A Computationally Efficient Algorithm for Genomic Prediction Using a Bayesian Model, Genetics Selection Evolution, 47(1):34, 2015.

206. Lee H, Chen YPP (2015), Image Based Computer Aided Diagnosis System for Cancer Detection, Expert Systems with Applications, 42(12), 5356-5365, 2015.

205. Yang HF, Chen YPP (2015), Data Mining in Lung Cancer Pathologic Staging Diagnosis: Correlation between Clinical and Pathology Information, Expert Systems With Applications, 42(15-16):6168-6176, 2015.

204. Simpson A, El-Refaie A, Stephenson C, Chen YPP, Deng D, Erickson S, Tay D, Morris ME, Doube W and Caelli T (2015), Computer-Based Rehabilitation for Developing Speech and Language in Hearing-Impaired Children: A Systematic Review, Deafness & Education International, 17(2):111-119, 2015.

2014

Journals:

203. Kalyaanamoorthy S, Chen YPP (2014), A steered molecular dynamics mediated hit discovery for histone deacetylases, Physical Chemistry Chemical Physics, 16(8), 3777-3791, 2014.

202. Zhu W, Chen YPP (2014) Computational developments in microRNA-regulated protein-protein interactions, BMC Systems Biology, 2014, 8:14.

201. Liu Q, Chen YPP, Li J (2014), k-Partite Cliques of Protein Interactions: A Novel Subgraph Topology for Functional Coherence Analysis on PPI Networks, Journal of Theoretical Biology, 340:146–154, 2014.

200. Kourfariotis L., Chen YPP, Sunduimijid B, Hayes BJ (2014) Regulatory and coding genome regions are enriched for trait associated variants in dairy and beef cattle, BMC Genomics, 15:436, 2014.

199. Kalyaanamoorthy S, Chen YPP (2014), Modelling and enhanced molecular dynamics to steer structure-based drug discovery, Progress in Biophysics and Molecular Biology, 114(3):123–136, 2014.

198. Lee H, Chen YPP (2014) Cell Cycle Phase Detection with Cell Deformation Analysis, Expert Systems with Applications, 41(6):2644–2651, 2014.

197. Lee H, Chen YPP (2014) Skin Cancer Extraction with Optimum Fuzzy Thresholding Technique, Applied Intelligence, 40(3): 415-426, 2014.

196. Lee H, Chen YPP (2014) Cell Morphology Based Classification for Red Cells in Blood Smear Images, Pattern Recognition Letter, 49:155–161, 2014. 

195. Lalbakhsh P, Zaeri B, Chen YPP (2014), Using Dead Ants to improve the robustness and adaptability of AntNet routing algorithm, Journal of Network and Computer Applications, 44:196–211, 2014.

194. Chuang CH, Cheng SC, Chang CC, Chen YPP (2014), Model-Based Approach to Spatial-Temporal Sampling of Video Clips for Video Object Detection by Classification, Journal of Visual Communication and Image Representation, 25(5):1018–1030, 2014.

193. Chen F, Zhang Y, Chen YPP (2014) Subdividing Globally Important Zones Based on Data Distribution across Multiple Genome Fragments, Computers in Biology and Medicine, 48:109–118, 2014.

192. Chen F, Lia Z, Chen YPP (2014), Determining Common Insertion Sites Based on Retroviral Insertion Distribution across Tumors, Computational Biology and Chemistry, 51:83–92, 2014.

191. Zhu W, Hou J, Chen YPP (2014), Select Cluster Features for Better Layered Protein Function Prediction, Current Bioinformatics 9(3): 306-314, 2014.

2013

Journals:

190. Mazin P, Xiong J, Liu X, Yan Z, Zhang X, Li M, He L, Somel M, Yuan Y, Chen YPP, Li N, Hu Y, Fu N, Ning Z, Zeng R, Yang H, Chen W, Gelfand M and Khaitovich P (2013), Widespread splicing changes in human  brain development and aging, Molecular Systems Biology,9:633, 2013.

189. Li Z, Bammann H, Li M, Liang H, Yan Z, Chen YPP, Zhao M. and Khaitovich P (2013), Evolutionary and ontogenetic changes in RNA editing in human, chimpanzee, and macaque brains, RNA 2013 19:1693-1702.

188. Yuan Y, Yang L, Shi M, Lu D, Lou H, Chen YPP, Jin L, Xu S (2013), Identification of Well-Differentiated Gene Expressions between Han Chinese and Japanese Using Genome-Wide Microarray Data Analysis, Journal of Medical Genetics, 50(8):534-42, 2013.

187. Cheng SC, Cheng KY, Chen YPP (2013), GHT-Based Associative Memory Learning and Its Application to Human Action Detection and Classification, Pattern Recognition, 46(11):3117–3128, 2013.

186. Kalyaanamoorthy S, Chen YPP (2013), Ligand release mechanisms and channels in histone deacetylases. Journal of Computational Chemistry 34(26): 2270-2283, 2013.

185. Kalyaanamoorthy S, Chen YPP (2013), Energy based pharmacophore mapping of HDAC inhibitors against class I HDAC enzymes, BBA - Proteins and Proteomics, 1834(1):317-328, 2013.

184. Kalyaanamoorthy S, Chen YPP (2013),Quantum polarized ligand docking investigation to understand the significance of protonation states in histone deacetylase inhibitors, Journal of Molecular Graphics and Modelling, 44:44–53, 2013.

183. Lee CC, Chen YPP, Yao TJ, Lo WC, Lyu PC, Tang CY and Ma CY (2013), GI-POP: A combinational annotation and Genomic Island prediction Pipeline for Ongoing microbial genome Projects, Gene, 518:114-123, 2013.

182. Nahar J, Imam T, Tickle K, and Chen YPP (2013), "Computational Intelligence for Heart Disease Diagnosis: A Medical Knowledge Driven Approach", Expert Systems With Applications, 40(1):96-104, 2013.

181. Nahar J, Imam T, Tickle K, and Chen YPP (2013), "Association Rule Mining to Detect Factors which contribute to Heart Disease in Males and Females", Expert Systems With Applications, 40(4):1086-1093, 2013.

180. Nguyen T, Zhen H, Chen YPP (2013), SeTPR*-tree: Efficient Buffering for Spatiotemporal Indexes Via Shared Execution, The Computer Journal, 56(1):115-137, 2013.

179. Zhu W, Hou J, Chen YPP (2013) Semantically Predicting Protein Functions Based on Protein Functional Connectivity, Computational Biology and Chemistry, 44: 9-14, 2013.

178. Song X, Wang M, Chen YPP (2013), Wang  H, Han P, Sun H: Prediction of pre-miRNA with multiple stem-loops using pruning algorithm. Computers in Biology and Medicine. 43(5):409-416, 2013.

177. Hou J, Zhu W, Chen YPP (2013), Dynamically predicting protein functions from semantic associations of proteins, Network Modeling Analysis in Health Informatics and Bioinformatics, 2(4):175-183, 2013.

2012

Journals:

176. Yuan Y, Chen YPP, Boyd-Kirkup J, Khaitovich P and Somel M (2012), Accelerated aging-related transcriptome changes in the female prefrontal cortex, Aging Cell, 11(5):894-901, 2012.

175. Kalyaanamoorthy S, Chen YPP (2012), Exploring Inhibitor Release Pathways in Histone Deacetylases Using Random Acceleration Molecular Dynamics Simulations, Journal of Chemical Information and Modeling, 52(2): 589–603, 2012.

174. Lee CC, Lo WC, Lai SM, Chen YPP (2012), Tang CY and Lyu PC, Metabolic classification of microbial genomes using functional probes, BMC Genomics, 13:157, 2012.

173. Chiu JKH, Chen YPP (2012), Conformational Features of Topologically Classified RNA Secondary Structures, PLoS ONE, 7(7):e39907, 2012.

172. Zhu W, Hou J, and Chen YPP (2012), Exploiting Multi-Layered Information to Iteratively Predict Protein Functions, Mathematical Biosciences, 236(2):108–116, 2012.

171. Chen Q, Chen YPP (2012), Discovering Inhibition Pathways for Protein Kinases. IEEE Intelligent Systems, 27(5):19-26, 2012.

170. Song X, Cheng L, Zhou T, Guo X, Zhang X, Chen YPP, Han P, Sha J (2012), Predicting miRNA-mediated gene silencing mode based on miRNA-target duplex features, Computers in Biology and Medicine, 42(1):1–7, 2012.

169. Nahar J, Imam T, Tickle K, Ali S and Chen YPP (2012), "Computational Intelligence for Microarray Data and Biomedical Image Analysis for the Early Diagnosis of Breast Cancer", Expert Systems With Applications, 39:12371–12377, 2012.

168. Rajasekaran R, Chen YPP (2012), Probing the structure of Leishmania major DHFR TS and structure based virtual screening of peptide library for the identification of anti-leishmanial leads, Journal of Molecular Modeling, 18(9):4089-4100, 2012.

167. Gotoh Y, Yoshihisa T, Taniguchi H, Kanazawa M, Rahayu W, and Chen YPP (2012), "A Scheduling Method to Reduce Waiting Time for Close-range Broadcasting'', Mobile Information Systems Journal (MOBIS), Vol.8, Issue.4, pp.303-314, 2012.

Refereed conference papers:

166. Begley S, Zhen H, Chen YPP (2012), “MCJoin: A memory-constrained join for column-based main-memory databases”, Proceedings of the ACM SIGMOD 39th International Conference on Management of Data, SIGMOD 2012, 121-165. Scottsdale, Arizona, USA, 20-24 May 2012.

164. Gotoh Y, Yoshihisa T, Taniguchi H, Kanazawa M, Rahayu W, and Chen YPP (2012), "A Scheduling Method for Node Relay-based Webcast Considering Reconnection'' 26th IEEE International Conference on Advanced Information Networking and Applications (AINA-2012), 787-794, Fukuoka, Japan, 26-29 March 2012.

2011

Journals:

163. Chen Q, Chen YPP (2011), Modeling Conserved Structure Patterns for Functional Noncoding RNA. IEEE Transactions on Biomedical Engineering, 58(6):1528-1533, 2011. 

162. Chen Q, Li G, Chen YPP (2011), Interval-Based Distance Function for Identifying RNA Structure Candidates, Journal of Theoretical Biology, 269(8):280-286, 2011.

161. Yang L, Zhen H, Chen YPP, Nguyen T (2011), External Sorting on Flash Memory Via Natural Page Run Generation, The Computer Journal, 54(11):1882-1990, 2011.

160. Yuan Y, Chen YPP, Ni S, Xu AG, Tang L, Vingron M, Somel M, Khaitovich P (2011), Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series, BMC Bioinformatics, 12:347, 2011.

159. Kalyaanamoorthy S, Chen YPP (2011), Structure-based drug design to augment hit discovery, Drug Discovery Today, 16(17-18):831-839, 2011.

158. Xi Y, Chen YPP, Qian C., Wang F (2011), Comparative study of computational methods to detect the correlated reaction sets in biochemical networks, Briefings in Bioinformatics 12(2):132-150, 2011.

157. Nahar J, Tickle K, Ali S. Chen YPP (2011), Significant Cancer Prevention Factor Extraction: An Association Rule Discovery Approach, Journal of Medical Systems 35(3):353-367, 2011.

156. Chen Q, Chen YPP (2011),  Mining Protein Kinases Regulation using Graphical Models. IEEE Transactions on NanoBioscience, 10(1):1-8, 2011.

155. Song XF, Han P, Chen YPP (2011), Genetic variation of the hemagglutinin of Avian influenza Virus H9N2, Journal of Medical Virology, 83(5):838-46, 2011.

154. Chen Q, Chen YPP (2011), Function Annotation for Pseudoknot using Structure Similarity. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8(6):1535-1544, Nov-Dec 2011.

153. Wang TT, Chen F. Chen YPP (2011), Ranking Inter-Relationships between Clusters, International Journal of Systems Science, 42(12):2071-2083, 2011.

Refereed conference papers:

152. Gotoh Y, Yoshihisa T, Taniguchi H, Kanazawa M, Rahayu W, and Chen YPP (2011), "A Method to Reduce Waiting Time for Close-range Broadcasting." The 9th International Conference on Advances in Mobile Computing and Multimedia (MoMM 2011), Ho Chi Minh City, Vietnam, vol. MoMM 2011, 116-122.

151. Song XF, Wang M, Chen YPP, and Ping H (2011), "Identifying multiple stem-loops pre-miRNA using support vector machine." The 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW 2011), Atlanta, Georgia, USA, vol. BIBMW 2011, 446-448.

150. Wang HW, Wu WK, Pai TW, Chen YPP, and Chang MDT (2011), "Impact of complex formation on predicting conformational epitopes." The 2nd IASTED International Conference on Computational Bioscience, CompBio 2011, Cambridge, United Kingdom, vol. CompBio 2011, 284-290.

2010

Journals:

149. Chen F, Chen YPP (2010) Exploring Cross-species Related miRNAs Based on Sequence and Secondary Structure, IEEE Transactions on Biomedical Engineering 57(7)1547–1553, 2010.

148. Chen Q, Chen YPP (2010) Mining Characteristic Relations Bind to RNA Secondary Structures, IEEE Transactions on Information Technology in Biomedicine, 14(1):10-15, 2010.

147. Zhu W, Hou J, and Chen YPP (2010) Semantic and layered protein function prediction from PPI networks, Journal of Theoretical Biology, 267(2):129-136, 2010.

146. Mann S, Chen YPP (2010) Bacterial genomic G+C composition-eliciting environmental adaptation, Genomics, 95(1):7-15, 2010.

145. Mann S, Li J, Chen YPP (2010) Insights into Bacterial Genome Composition through Variable Target GC Content Profiling, Journal of Computational Biology, 17(1):79-96, 2010.

144. Chen F, Chen YPP (2010) Exploring the ncRNA-ncRNA patterns based on bridging rules. Journal of Biomedical Informatics 43(4):569-577, 2010.

143. Jiang D, Zhou S, Liu H, Chen YPP (2010) Inferring minimal feasible metabolic networks of Escherichia coli, Applied Biochemistry and Biotechnology, 160(1):222-231, 2010.

142. Tjondronegoro, D, Chen YPP, Knowledge-discounted Event Detection in Sports Video, IEEE Transactions on Systems Man & Cybernetics, Part A. 40(5):1009-1024, 2010.

141. An J, Choi KP, Wells CA, Chen YPP (2010), Identifying co-regulating microRNA Groups, Journal of Bioinformatics and Computational Biology. 8(1):99-115, 2010.

140. Sajjanhar A, Lu G, Zhang D, Hou J, Zhou W, Chen YPP (2010), Spectral Shape Descriptor using Spherical Harmonics, Integrated Computer-Aided Engineering 17:1–7, 2010.  

139. Zhang Z, Chen YPP (2010) Guest Editors' Introduction. International Journal of Software Engineering and Knowledge Engineering 20(8):1043-1044, 2010.

Book Chapter

138. Chen F, Chen YPP (2010), Pattern recognition for genomics context, Pattern Recognition and Machine Vision, Chapter 7, editor by Patrick S.P. Wang, River Publishers. 105-118, 2010.

137. Chen YPP, Ivanova E, Carloni P, Wang F (2010), Bioinformatics and its applications, in Comprehensive Natural Products II: Chemistry and Biology, Eds., Lewis N. Mander and Hung-wen (Ben) Liu, pp569-593 (Elsevier, 2010).

2009

Journals:

136. Chen Q. Chen YPP (2009), Discovery of Structural and Functional Features in RNA Pseudoknots, IEEE Transactions on Knowledge and Data Engineering, 21(7):974-984, 2009.

135. Xi Y, Chen YPP, Cao M, Wang W and Wang F (2009), Analysis on relationship between extreme pathways and correlated reaction sets. BMC Bioinformatics, 10(S1):S58, 2009.

134. Jiang D, Zhou S, Chen YPP (2009), Compensatory ability to null mutation in metabolic networks, Biotechnology and Bioengineering, 103(2):361-369, 2009.

133. Song XF, Chen WM, Chen YPP, Jiang B (2009), Candidate Working Set Strategy based SMO Algorithm in Support Vector Machine, Information Processing & Management 45(5): 584-592, 2009.

132. Rong J, Li G, Chen YPP (2009), Acoustic Feature Selection for Automatic Emotion Recognition from Speech. Information Processing & Management, 45(3):315-328, 2009.

131. An J, Chen YPP (2009), Finding Coverage Using Incremental Attribute Combinations, International Journal of Innovative Computing, Information and Control, 5(5):1419-1428, 2009.

130. An J, Chen YPP (2009), Finding rule groups to classify high dimensional gene expression datasets, Computational Biology and Chemistry 33(1):108-113, 2009.

Book Chapters

129. Chen YPP, Rong J, Li G (2009), Advanced Graph Mining Methods for Protein Analysis. Biological Data Mining. Edited by Jake Y. Chen, Stefano Lonardi, Chapter 6, Chapman & Hall/CRC Press, 111-132.

Lecture Notes in Computer Science/Artificial Intelligence:

128. Sajjanhar A, Lu G, Zhang D, Hou J, Chen YPP (2009), Spherical Harmonics and Distance Transform for Image Representation and Retrieval, E. Corchado and H. Yin (Eds.), Lecture Notes in Computer Science, Volume 5788, pp. 309-316, 2009.

Refereed conference papers:

127. Liu Q, Chen YPP, Li J (2009), High functional coherence in k-partite protein cliques of protein interaction networks, Proceedings of 2009 IEEE International conference on Bioinfomratics and Biomedicine, page 111-117. Washington D.C., USA. 1-4 November 2009.

126. Nahar J., Tickle K, Ali S. Chen YPP (2009), Early Breast Cancer Identification: Which Way to Go? Microarray or Image Based Computer Aided Diagnosis!, 2009 Third International Conference on Network and System Security, pp456-461. 2009.

125. Hou J, Chen YPP (2009), Data Pre-Processing for More Effective Gene Clustering, The 2009 International Joint Conference on Computational Sciences and Optimization (CSO 2009), Sanya, Hainan, China, April 24-26, 2009.

2008

Journals:

124. Chen YPP, Chen F (2008), Using Bioinformatics Techniques for Gene Identification in Drug Discovery and Development, Current Drug Metabolism, 9(6):567-573, 2008.

123. Knapp K, Chonka A, and Chen YPP (2008), POEM, a 3-Dimensional Exon Taxonomy and Patterns in Untranslated Exons, BMC Genomics, 9:428, 2008.

122. An J, Chen YPP (2008), Finding Edging Genes From Microarray Data, Journal of Biotechnology, 135(3):233-240, 2008.

121. Chen YPP, Chen F (2008), Identifying Targets for Drug Discovery using Bioinformatics, Expert Opinion on Therapeutic Targets, 12(4):383-389, 2008.

120. Tjondronegoro D, Chen YPP, Joly A (2008), A Scalable and Extensible Segment-Event-Object based Sports Video Retrieval System, ACM Transactions on Multimedia Computing, Communications and Applications, 4(2):13:1-13:40, 2008. [PDF].

119. Chen Q, Zhang S. Chen YPP (2008), Rule-based dependency models for security protocol analysis, Integrated Computer-Aided Engineering 15:369-380, 2008.

Books:

118. Song IY, Piattini M, Chen YPP, Hartmann S, Grandi F, Trujillo J, Opdahl AL, Ferri F, Grifoni P, Caschera MC, Rolland C, Woo C, Salinesi C, Zimányi E, Claramunt C, Frasincar F, Houben GJ, Thiran P (2008), Advances in Conceptual Modeling - Challenges and Opportunities, ER 2008 Workshops CMLSA, ECDM, FP-UML, M2AS, RIGiM, SeCoGIS, WISM, Barcelona Spain, October 20-23, 2008. Proceedings Springer 2008

Lecture Notes in Computer Science/Artificial Intelligence:

117. Schmidt S, Li G, Chen YPP (2008), Medical Knowledge Discovery from a Regional Asthma Dataset (ICIC2008), Lecture Notes in Computer Science 5227: 888-895, 2008.

Refereed conference papers:

116. Lukman S, Sim K, Li J and Chen YPP (2008), Interacting Amino Acid Preferences of 3D Pattern Pairs at the Binding Sites of Transient and Obligate Protein Complexes, The Sixth Asia Pacific Bioinformatics Conference (APBC2008), 14-17 January 2008 Kyoto, Japan.

115. Sajjanhar A, Lu G, Zhang D, Zhou W and Chen YPP (2008), Image Retrieval Based On Semantics of Intra-Region Color Properties, IEEE 8th International Conference on Computer and Information Technology, 8-11 July 2008, Sydney Australia.

2007

Journals:

114. Knapp K. Chen YPP (2007), An Evaluation of Contemporary Hidden Markov Model Genefinders with a Predicted Exon Taxonomy, Nucleic Acids Research, 35: 317-324, 2007. [pdf]

113. Mann S., Li J., Chen YPP (2007), A pHMM-ANN based discriminative approach to promoter identification in prokaryote genomic contexts, Nucleic Acids Research 35: e12 1-7, 2007. [pdf]

112. Chen Q, Chen YPP and Zhang C (2007), Detecting Inconsistency in Biological Molecular Databases using Ontology, Data Mining and Knowledge Discovery 15:275-296, 2007. [pdf]

111.  An J. Yu JX, Ratanamahatana CA, Chen YPP (2007), A Dimensionality Reduction Algorithm and Its Application for Interactive Visualization, Visual Languages and Computing, Elsevier Science 18:48-70, 2007. [pdf]

110. Chen Y, Timms P and  Chen YPP (2007), CIDB: Chlamydia Interactive Database for cross-querying genomics, transcriptomics and proteomics data, Biomolecular Engineering. 24(6):603-608, 2007.[pdf]

109. Nahar J., Ali S. Chen YPP (2007), Microarray Data Classification Using Automatic SVM Kernel Selection, DNA and Cell Biology, 26(10):707-712, 2007. [pdf]

108. Nahar J.,  Chen YPP, Ali S (2007), Kernel Based Naive Bayes Classifier for Breast Cancer Prediction, Journal of Biological Systems, 15(1):17-25, 2007.

Lecture Notes in Computer Science/Artificial Intelligence:

107. Chen YPP, Qin Q, Chen Q (2007), Learning Dependency Model for AMP-activated Protein Kinase Regulation, Lecture Notes in Artificial Intelligence, 4798: 221-229, 2007.

106. Chen Q, Zhang S, Chen YPP (2007), Identifying Dependency between Secure Messages for Protocol Analysis, Lecture Notes in Artificial Intelligence: 4798: 30-38, 2007.

Refereed conference papers:

105. Nahar J, Chen YPP, Ali S (2007), Microarray Classification and Rule Based Cancer Identification, Proceedings of International Conference on Information and Communication Technology (ICICT 2007) March 7-9, Dhaka, IEEE, pp 43-46, 2007.

104. Sunramaniam C, An J, Gubbi J, Chen YPP (2007), Finding Motifs in miRNA Sequences, Proceedings of The Sixth International Conference on Computer and Information Science (ICIS 2007), Melbourne, Australia. IEEE CS pp. 507-512, 11-13 July 2007.

103  Rong J, Chen YPP, Chowdhury M, Li G (2007), Acoustic Features Extraction for Emotion Recognition, Proceedings of The Sixth International Conference on Computer and Information Science (ICIS 2007), Melbourne, Australia. IEEE CS, pp. 419-424, 11-13 July 2007.

102. Chen Q, Zhang C. Chen YPP (2007), Probabilistic Reasoning of Inconsistent Belief in Protocol Analysis, Proceedings of 2007 International Conference on Intelligent Systems and Knowledge Engineering (ISKE2007), Chengdu, China, 2007.

101. Knapp K, Rahaman A, Chen YPP (2007), Non-Quantized Minimum Free Energy in Untranslated Region Exons, Proceedings of Computational Structural Bioinformatics Workshop (CSBW) is held in conjunction with the IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007) IEEE, pp. 32-37, 2007.

2006

Journals:

100. Chen Q. Chen YPP (2006), Mining Frequent Patterns for AMP-activated Protein Kinase Regulation on Skeletal Muscle, BMC Bioinformatics 7:394, 2006. [pdf]

99. Chen YPP,  Prompramote S, Maire F (2006), MDSM: Microarray Database Schema Matching By Using Hungarian Method , Information Sciences, 176:2771-2790, 2006. [pdf]

98. Lopez C., Chen YPP (2006)Using Object and Trajectory Analysis to Facilitate Indexing and Retrieval of Video, Knowledge-Based Systems Journal, 19(8):639-646, 2006. [pdf]

97. Lau RYK, Tang M, Wong O, Milliner SW, Chen YPP (2006),  An evolutionary learning approach for adaptive negotiation agents , International Journal of Intelligent Systems, 21(1):41-72, 2006. [pdf]

96. Chen YPP, Hwang MJ, Lee SK, Wong L (2006), Bioinformatics in Asia Pacific, Asia Pacific Biotech News, (10):24, 2006.

95. Shi W, Zhou W,  Chen YPP (2006), Statistical Analysis of TATA Box and Its Extensions in the Promoters of Human Genes, Current Bioinformatics, 1(3):337-345, 2006.

94. Chen YPP and Chua TS (2006), Introduction: Multimedia Modelling . The Visual Computer, 22:1–2, 2006.

Books:

93. Jiang T, Yang UC, Chen YPP, and Wong L Editors (2006) Proceedings of the 4th Asia-Pacific Bioinformatics Conference, Imperial College Press, London, February 2006. Advances in Bioinformatics & Computational Biology Vol 3 Feb 2006, by Imperial College Press.

Lecture Notes in Computer Science/Artificial Intelligence:

92. An J.  Chen YPP (2006), A similarity search algorithm to predict protein structures, 10th International Conference on Knowledge-Based & Intelligent Information & Engineering Systems (KES2006) , UK. Lecture Notes in Computer Science, LNCS 4252 Springer-Verlag, pp. 1305-1312, 9-11 October 2006.

91. Chen Q, Chen YPP, Zhang C and Li L.(2006), Mining Frequent Itemsets for Protein Kinase Regulation, Lecture Notes in Computer Science, LNCS4099, The 9th Pacific Rim International Conference on Artificial Intelligence, Springer-Verlag, pp222-230, 2006.

90. Chen Q, Chen YPP, Zhang C, Zhang S (2006), Detecting Collusion Attacks in Security Protocols, The Eighth Asia Pacific Web Conference January (APWeb2006) 16-18, Harbin, China. Lecture Notes in Computer Science, LNCS3841. pp297-306, 2006.

Refereed conference papers:

89. An J, Chen YPP (2006), Finding Rule Groups to Classify High Dimensional Gene Expression Datasets, The 18th International Conference on Pattern Recognition 2006 (ICPR2006) 20 - 24 August 2006, Hong Kong, IEEE CS Press, pp1196-1199. (Tier A)

88. An J, Chen YPP (2006), Finding Short Patterns to Classify Text Documents, The 2006 IEEE/WIC/ACM International Conference on Web Intelligence (WI-06) 18 - 22 Dec 2006, Hong Kong, IEEE CS Press.

87. Chen YPP, Chen Q (2006), Analyzing Inconsistency Toward Enhancing Integration of Biological Molecular Databases, Proceedings of the fourth Asia-Pacific Bioinformatics Conference (APBC2006) Taipei Taiwan, pp197-206, 13-16 Feb 2006.

86. Tjondronegoro D, Chen YPP (2006), Using Decision-Tree to Automatically Construct Learned-Heuristics for Events Classification in Sports Video . IEEE International Conference on Multimedia & Expo (ICME2006) IEEE CS Press, Toronto, Canada, pp1465-1468, July 9-12, 2006, .

85. Tjondronegoro D, Chen YPP (2006), Towards Universal and Statistical-Driven Heuristics for Automatic Classification of Sports Video Events . the 12th International Multimedia Modelling Conference (MMM2006) IEEE Press, pp43-50, 2006.

84. Tjondronegoro D, Chen YPP, Pham B (2006), Extensible Detection and Indexing of Highlight Events in Broadcast Sports Video Towards Universal and Statistical-Driven Heuristics for Automatic Classification of Sports Video Events . The 29th Australasian Computer Science Conference-2006 (ACSC2006) Hobart, TAS, Australia, pp237-246, 2006.

83. An J, Chen YPP (2006), Depth First Rule Generation for Text Categorization , Proceedings of The Fourth International Conference on Active Media Technology (AMT 2006), Brisbane Australia, pp.302-306, June 7-9 2006.

82. Subramaniam C, An J.,  Chen YPP (2006), Microarray Analysis for Gene Expression that involves Trace Metals , Proceedings of The Fourth International Conference on Active Media Technology (AMT 2006), Brisbane Australia pp211-216, June 7-9 2006.

81. Morrison D, Saijanhar A, Hou J, Chen YPP (2005) Providing Real-Time Information Services for Public Bus Commuters , Proceedings of The Fourth International Conference on Active Media Technology (AMT 2006), Brisbane Australia pp384-387, June 7-9, 2006.

2005

Journals:

80. An J., Chen YPP  CHEN H. (2005), DDR: An Index Method for Large Time Series Datasets , Information Systems, (30)5:333-348, 2005. [pdf]

79. Zhang C, Chen YPP, Zhang S, Chen Q (2005), Mining Inconsistent Secure Messages Toward Analyzing Security Protocol, The International Journal of Intelligent Control and Systems (IJICS) 10(1):77- 85, 2005.

78. Garcia A, Chen YPP, Ragan MA (2005), Information Integration in Molecular Bioscience, Applied Bioinformatics, 4(3):157-173, 2005.

77. Chen YPP (2005), Advanced Techniques for Bioinformatics . The Journal of Bioinformatics & Computational Biology, 3(1):99-102, 2005.

Books:

76. Chen YPP, Ed., Bioinformatics Technologies, Springer - Jan 2005.

75. Chen YPP, and Wong L. Editors (2005),  Proceedings of the Third Asia-Pacific Bioinformatics Conference, Advances in Bioinformatics & Computational Biology Vol 1 Jan 2005, by Imperial College Press.

74. Chen YPP, Ed (2005), Multimedia Modelling, Proceedings of the 11th International Multimedia Modelling Conference, IEEE CS Press.

Book Chapters

73. Chen YPP (2005), Introduction to Bioinformatics. Bioinformatics Technologies, edited by Y.-P. Phoebe  CHEN Chapter 1, pages 1-14, Springer, pp1-13, 2005.

72. Prompramote S, Chen  Y, Chen YPP (2005), Machine Learning in Bioinformatics , Bioinformatics Technologies, edited by Y.-P. Phoebe  CHEN Chapter 5, pages 117-154, Springer, pp117-153, 2005.

71. Shi W, Zhou W, Chen YPP (2005), Biological Sequence Assembly and Alignment , Bioinformatics Technologies, edited by Y.-P. Phoebe  CHEN chapter 8, pages 243-262, Springer, pp241-261, 2005.

70. Mann S,  Chen YPP (2005), Modeling for Bioinformatics , Bioinformatics Technologies, edited by Y.-P. Phoebe  CHEN Chapter 9, pages 263-298, Springer, pp263-298, 2005.

69. Tse B, Hume D, Chen YPP (2005),  Pattern Matching for Motifs , Bioinformatics Technologies, edited by Y.-P. Phoebe  CHEN Chapter 10, pages 299-312, Springer, pp299-312, 2005.

68. Yu ZG, Anh V, Chen YPP (2005), Visualization and Fractal Analysis of Biological Sequences , Bioinformatics Technologies, edited by Y.-P. Phoebe  CHEN Chapter 11, pages 313-352, Springer, pp313-351, 2005.

67. Liew AWC, Yan H, Yang M, Chen YPP (2005), Microarray Data Analysis , Bioinformatics Technologies, edited by Y.-P. Phoebe  CHEN Chapter 12, pages 353-388, Springer, pp353-388, 2005.

Lecture Notes in Computer Science/Artificial Intelligence:

66. An J, Chen YPP, Xu Q and Zhou X (2005), A New Indexing Method for High Dimensional Dataset , Database Systems for Advanced Applications (DASFAA2005) Lecture Notes in Computer Science, LNCS3453, Springer-Verlag, pp385-397, 2005. (Tier A)

65. Tjondronegoro D ,  Chen YPP (2005), Multi-level Semantic Analysis for Sports Video . Knowledge-Based Intelligent Information and Engineering Systems (KES). Lecture Notes in Computer Science, LNCS3682, Springer pp24-30, 2005.

64. An J,  Chen YPP (2005), Yet Another Induction Algorithm , Knowledge-Based & Intelligent Information & Engineering Systems (KES) Lecture Notes in Computer Science, LNCS3682, Springer, pp37-44, 2005. [PDF]

63. Chen Q, Chen YPP, (2005), Analyzing Security Protocols using Association Rule Mining, The 18th Australian Joint Conference on Artificial Intelligence, Sydney Australia, Lecture Notes in Artificial Intelligence LNAI3809. Springer-Verlag, pp 245-253, 5-9 December 2005.

Refereed conference papers:

62. Tjondronegoro D,  Chen YPP and Pham B (2005), Extraction and Classification of Self-consumable Sport Video Highlights , in Proceedings of The ACM MM2005, Singapore, 2005. (Tier A+)

61. Garcia A, Thoraval S, Garcia LJ, Chen YPP, Ragan MA, (2005), Bioinformatics workflows: G-PIPE as an implementation, Fifth workshop on Workflow Managements: new abailities for the biological information overview, Naples, Italy. pp61-64, Oct 5-7 2005.

60. Tjondronegoro D, Chen YPP and Pham B (2005), A Statistical-driven Approach for Automatic Classification of Events in AFL Video Highlights. In Proc. Twenty-Eighth Australasian Computer Science Conference (ACSC2005) Newcastle, Australia. CRPIT, 38. Estivill-Castro, V., Ed. ACS. pp209-218, 2005.

59. An J, Chen YPP (2005), Keyword Extraction for Text Categorization , Proceedings of The  Third International Conference on Active Media Technology (AMT 2005), Takamatsu, Kagawa, Japan, IEEE, pp556-561, MAy 19-21, 2005.

58. Tjondronegoro D, Chen YPP and Pham B (2005), Content-based Video Indexing for Sports Applications using Integrated Multi-Modal Approach , in Proceedings of The 4th Asia Pacific International Symposium on Information Technology, Gold Coast, Australia, pp200-203, Jan. 26-27, 2005.

57. An J, Chen YPP, Subramaniam C (2005), Side Chain Conformational Preferences in Protein Structures , The 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences (METMBS '05) Monte Carlo Resort, Las Vegas, Nevada, USA. pp48-52, June 20-23, 2005.

56. Saijanhar  A, Hou J, Chen YPP (2005), Content Exploration for e-Learning Using XML Web Services , Proceedings of The  Third International Conference on Active Media Technology (AMT 2005) May 19-21, 2005, Takamatsu, Kagawa, Japan, IEEE, p266.

55. Chen Q, Chen YPP, Zhang C., Zhang S (2005), A Framework for Merging Inconsistent Beliefs in Security Protocol Analysis, International Workshop on Data Engineering Issues in E-Commerce (DEEC2005) in conjunction with ICDE2005 conference Tokyo, Japan, Tokyo, Japan, IEEE, pp112-117, 9 Apr 2005.

54. Prompramote S, Chen YPP (2005), ANNODA: Tool for integrating Molecular-biological Annotation Data, in Proceedings of International Workshop on Biomedical Data Engineering (BMDE2005) in conjunction with ICDE2005, IEEE, pp113-120, April 3-4, 2005, Tokyo, Japan.

2004

Journals:

53. Tjondronegoro D, Chen YPP and Pham B (2004), Integrating Highlights for More Complete Sport Video Summarization , IEEE Multimedia, Oct-Dec, pp22-37, 2004.

52. Soon L,  Chen YPP and Underwood A (2004), Knowledge Creation in Export Trading , Journal of Information & Knowledge Management (JIKM), 3(4):297-316, 2004.

51. Zhang J, Pham B and Chen YPP (2004), A Fuzzy Shape Database to Support Conceptual Design , Control and Cybernetics, 1:141-172, 2004.

Books:

50. Chen YPP, Editor (2004), Bioinformatics 2004, Proceedings of the Second Asia-Pacific Bioinformatics Conference, Vol 29 in the Conferences in Research and Practice in Information Technology Series, published by the Australian Computer Society, in Association with the ACM Digital Library, Jan. 2004.

49. Chen YPP, Editor (2004), Multimedia Modelling, Proceedings of the 10th International Multimedia Modelling Conference, IEEE CS Press, 2004.

Lecture Notes in Computer Science/Artificial Intelligence:

48. An J, Chen YPP and Keogh E (2004), A Grid-based Index Method for Time Warping Distance , Web-Age Information Management, Lecture Notes in Computer Science, LNCS Vol 3129, Springer-Verlag, pp65-75, 2004.

47. An J, Chen YPP and Xu Q (2004), Surface Spatial Index Structure of  High-Dimensional Space , Intelligent Data Engineering and Automated Learning, Lecture Notes in Computer Science, LNCS Vol 3177, Springer-Verlag, pp272-278, 2004.

Refereed conference papers:

46. Tjondronegoro D, Chen YPP and Pham B (2004), The Power of Play-Break for Automatic Detection and Browsing of Self-consumable Sport Video Highlights , 6th ACM SIGMM International Workshop on Multimedia Information Retrieval (MIR'04), New York, NY USA, in conjunction with ACM Multimedia, pp267-274, October 15-16, 2004 . (Tier A)

45. Mann S, Chen YPP and Eaton L (2004), A Computational Framework for Nucleic Acid Sub-Sequence Identification , Proceedings of IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE2004) May 19-21, Taichung, Taiwan, ROC. IEEE CS Press, pp467-474, 2004.

44. Chen Y, Chen YPP and Zhu J (2004), Real-Time Gene-Expression Extraction with Fast Classification (FC) Networks , Proceedings of The 2004 International Conference on Machine Learning, Models, Technologies and Applications (MLMTA'04), Las Vegas, Nevada, USA, pp883-889, June 21-24, 2004.

43. Tjondronegoro D, Chen YPP and Pham B (2004), Classification of Self-Consumable Highlights for Soccer Video Summaries , Proceedings of The 5th IEEE International Conference on Multimedia and Expo (ICME2004) The Grand Hotel, Taipei, Taiwan. IEEE CS Press, June 27th–30th, 2004.

42. Wu ST, Li Y, Xu Y, Pham B and Chen YPP (2004), Automatic Pattern-Taxonomy Extraction for Web Mining , IEEE/WIC/ACM WI-2004, Beijing China, IEEE CS Press, pp242-248, Sep. 20-24 2004.

41. An J and Chen YPP (2004), Concept Learning of Text Documents , IEEE/WIC/ACM WI-2004, Sep 20-24 2004, Beijing China, IEEE CS Press, pp698-701, Sep. 20-24 2004.

40. Prompramote S, Chen YPP (2004)Rough Set Based Similarity Metrics for Mixed Data Set: A Case Study of Heart Disease Diagnosis , the 7th International Conference on Information Technology (CIT2004) Hyderabad, Andhra Pradesh, India, Dec. 2004.

39. Goward P and Chen YPP (2004), Redesign of a Multimedia Course to reflect process not product , international conference E-Learn 2004, Washington, DC , pp660-665, Nov. 1-5, 2004.

38. Goodman A and Chen YPP (2004), Maintaining Relevance in a Rapidly Changing Environment: Evolving a Multimedia Curriculum , Proceedings of 3rd Symposium on IT in Education, Kuala Lumpur pp9-13, Oct. 2004.

2003

Journals:

37. Chen YPP (2003), Biomedical Visualization,  Visual Languages and Computing 14 (4): 295-297, 2003.

36. Chen YPP (2003), Data Mining in Bioinformatics, International Journal of Software Engineering and Knowledge Engineering, 13(6), 2003.

35. Chen YPP (2003), Bioinformatics in Asia Pacific, Asia-Pacific Biotech News, published by World Scientific,7(3), 2003.

34. Chen YPP and Colomb BM (2003), Database Technologies for L-system Simulations in Virtual Plant Applications on Bioinformatics , Knowledge and Information Systems, 5(3):288-314, 2003. [PDF]

33. Chen YPP and McLachlan G (2003), Bioinformatics Research in Australia, Asia-Pacific Biotech News, published by World Scientific, 7(3), 2003.

Books:

32. Chen YPP, Editor (2003), Bioinformatics 2003, Proceedings of the First Asia-Pacific Bioinformatics Conference, Vol 19 in the Conferences in Research and Practice in Information Technology Series, published by the Australian Computer Society, in Association with the ACM Digital Library, February 2003.

Book Chapters: Lecture Notes in Computer Science/Artificial Intelligence:

31. Chen YPP (2003), A Hybrid Framework Using SOM and Fuzzy Theory for Textual Classification in Data Mining  , Modelling with Words, Lecture Notes in Artificial Intelligence, J. Lawry, J. Shanahan and A. Ralescu Eds, Springer-Verlag, pp153-167, 2003.

30. Tjondronegoro D, Chen YPP and Pham B (2003), Indexing of Goal Segments in Soccer Video for Semantic Retrieval  , Data Mining from Multimedia and Complex Data , C. Djeraba, S. J. Simoff, and O. R. Zaiane (Eds) Springer Verlag, 2003.

Refereed conference papers:

29. Chen YPP (2003), XML-based Multimedia Query Systems , Proceedings of the 9th International Multi-Media Modelling Conference (MMM'03) Taipei, Taiwan, pp.365-378. ISBN957-9078-57-2, 7-9 Jan 2003.

28. Tjondronegoro D, Chen YPP and Pham B (2003), Sports Video Summarization using Highlights and Play-Breaks, 5th ACM SIGMM International Workshop on Multimedia Information Retrieval (MIR2003), Boston, USA, in conjunction with ACM Multimedia 2003. (Tier A)

27. Prompramote S, Chen YPP and Maire F (2003), Information Management for Microarray Experimental Data  , 5th IFAC Symposium on Modelling and Control in Biomedical Systems, IFAC2003, Elsevier Science, pp377-382, 2003.

26. Soon L, Chen YPP and Underwood A (2003), Explicit Knowledge in Web-based Export Trading , Proceedings of the AUSWEB 2003, The Ninth Australian World Wide Web Conference, Gold Coast Queensland Australia, 5 - 9 July 2003.

25. Lee FS and Chen YPP (2003), BioWebFinder – Searching Biological Websites , Proceedings of the APAC'03, The APAC Conference and Exhibition on Advanced Computing, Grid Applications and eResearch, Royal Pines Resort Gold Coast, Queensland Australia, 29 Sep.- 2 Oct. 2003.

2002

Journals:

24.Chen YPP, and Hanan J (2002), Partial Automation of Database Processing of Simulation Outputs from L-systems Models of Plant Morphogenesis , BioSystems. (Journal of Biological and Information Processing Sciences) 65(2-3):187-197, 2002. [pdf]

23. Tjondronegoro D and Chen YPP (2002), Content-based Indexing and Retrieval using MPEG-7 and X-Query in Video Data Management Systems, World Wide Web Journal 5(3):207-227, 2002.[pdf]

Refereed conference papers:

22. Runoiang B, Chen YPP, Burrage K, Hanan J, Room P, Belward J (2002), Derivation of L-system models from measurements of biological branching structures using genetic algorithms, Proceedings of the Fifteenth International Conference on Industrial & Engineering Application of Artificial Intelligence & Expert Systems, June 17-20, 2002. Cairns, Australia, Lecture Notes in Artifical Intelligence, pp.514-524, Springer-Verlag, 2002. [PDF]

21Tjondronegoro D and Chen YPP (2002), Content-Based Video Data Management: Key-Segment Extraction, MPEG-7 Summarisation, and XQUERY Retrieval , Proceedings of International Workshop on Knowledge Discovery in Multimedia and Complex Data (KDMCD'02) in conjunction with the Sixth Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD-02), Taipei Taiwan, pp. 39-49. May 6-8 2002.

20. Zhang J, Pham B and Chen YPP (2002), Indexing and Retrieval of Fuzzy Shapes , Fuzzy Logic: a Paradigm for the New Millennium, Studies in Fuzziness and Soft Computing Volume No. 81, V. Dimitrov and V. Korotkich, eds., Physica-Verlag, pp240-252, 2002.

19. Zhang J, Pham B and Chen YPP (2002),  Modelling and Indexing of Fuzzy Complex Shapes , Proceedings of the Sixth IFIP Working Conference on Visual Database Systems, Brisbane Australia, pp.401-415, Kluwer Academic Publishers, 2002.

18. Soon L and Chen YPP (2002), Visualisation of Web-based Australian Export Trading , Proceedings of the Sixth IFIP Working Conference on Visual Database Systems (VDB6) Brisbane, Australia, pp.281-295, Kluwer Academic Publishers, 2002.

17. Zhang J, Pham B and Chen YPP (2002),  A Fuzzy Genetic Algorithm for Creative Shape Design , Proceedings of the Fourth International Symposium on Tools and Methods of Competitive Engineering. pp.315-329, Wuhan, Hubei, China, 2002.

16. Li X, and Chen YPP (2002), Automatic Assessment of e-Businesses , Proceedings of the International Conference on E-Business 2002, pp. 294-299, Beijing, China, pp294-299, May 23-26 2002.

15. Soon L, Chen YPP and Underwood A (2002), A Case Study on Virtual Export Trade Community , Proceedings of the AUSWEB 2002, The Eighth Australian World Wide Web Conference, pp. 211-224, Sunshine Coast Queensland Australia, July 6-10 2002.

2001

14. Chen YPP (2001), A Practical Approach for Professional Development Portfolio . TechTrain2001, Brisbane, Australia, 5 July - 7 July, 2001, .

13. Gunther P and Chen YPP (2001), A New Approach To Hybrid SOM Implementations For Text Classification , Proceedings of the 10th International IEEE conference on Fuzzy Systems, IEEE CS Press, pp.968-972, Melbourne December 2-5 2001. (Tier A)

12. Zhang J, Pham B and Chen YPP (2001), Fuzzy Genetic Algorithms Based on Level Interval Algorithm   Proceedings of the 10th International IEEE conference on Fuzzy Systems, IEEE CS Press. pp.1424-1428, Melbourne December 2-5 2001. (Tier A)

11. Zhang J, Pham B and Chen YPP (2001),  Fuzzy Genetic Algorithms with Fuzzy Solutions , Australian Journal of Intelligent Information Processing Systems, Vol. 7 No. 1/2, pp. 1-10, 2001.

2000

10. Chen YPP and Colomb RM (2000), Querying Recursive Structures Without Recursive Queries , the 11th Australian Database Conference, ADC-2000, IEEE CS Press, Canberra, Australia. pp.21-27, 31 January - 2 February, 2000.

9. Chen YPP (2000), Generating Database Representations of L-systems in Virtual Plant Applications , PhD Thesis, School of Computer Science and Electrical Engineering, The University of Queensland, 2001.

8. Zhang J, Pham B and Chen YPP (2000), Indexing and Information Retrieval of Shape Databases , Fuzzy Logic: a Paradigm for the New Millennium, Studies in Fuzziness and Soft Computing, V. Dimitrov and V. Korotkich, eds., Physica-Verlag, 2001.

7. Zhang J, Pham B and Chen YPP (2000), Construction of Fuzzy Shape Database, in With Fuzzy Logic in the New Millennium, V. Dimitrov and V. Korotkich, Eds., pp. 53-54, 2001.

1999

6. Chen YPP and Colomb RM (1999) Generic Process Solution in Database Systems and L-systems for Bioinformatics Research  Proc of The Second International Symposium on Cooperative Database Systems for Advanced Applications (CODAS'99), Wollongong, Australia, March 27-28, 1999. 

5. Chen YPP (1999), DML: A Bridge between Database Systems and L-Systems for Biological Research , The 11th International Conference on Scientific and Statistical Database Management (SSDBM'99) ACM SIGMOD and VLDB Endowment, IEEE press, Cleveland, Ohio, USA, July 28-30 1999. (Tier A)

4.  Chen YPP and Colomb RM (1999), Decision Support in Bioninformatics Research , Proc: The Fifth International Conference of The International Society for Decision Support Systems (ISDSS'99), Melbourne, Australia, 20-23 July 1999.

3.  Chen YPP and Colomb RM (1999), Generic Process Solution in Database Systems and L-systems for Bioinformatics Research , in Zhang Y., Rusinkiewicz M. and Kambayashi Y. (eds) Cooperative Databases and Applications’99, Springer-Verlag, pp.328-339.

1997-1998

2.  Chen YPP and Colomb RM (1998), Design: A Visual Database Development System  in B. Verma, Z. Liu, Z. Sattar, R. Surawski and J. You (eds.) 2nd IEEE International Conference on Intelligent Processing Systems (ICIPS'98) Gold Coast, Australia 4-7 August, 1998, IEEE CS Press, pp.198-202.

1. Colomb RM and Chen YPP (1997) Use of Partial Functional Dependencies to make Practical Approximate Translations Among Forms of Propositional Expert Systems  in Sattar A. (ed.) Advanced Topics in Artificial Intelligence, Lecture Notes in Artificial Intelligence Vol 1342. Springer-Verlag, pp 167-176, 1997.

   ACM DL

       

ACM DL

(C) Yi-Ping Phoebe Chen 

This page was last updated on 12/4/2014