2023 |
Journals:
293. SQ Abbas, L Chi, YPP Chen (2023) Transformed domain
convolutional neural network for alzheimer's disease diagnosis using
structural MRI, Pattern Recognition 133, 109031.
292. Tung MH, Chen YPP, Liu CY, Liao CS (2023) A
Fast and More Accurate Seed-and-Extension Density-based Clustering
Algorithm, IEEE Transactions on Knowledge and Data
Engineering.
291. B Yuan, Y Sheng, BK Bao, YPP Chen, C Xu (2023) Semantic
Distance Adversarial Learning for Text-to-Image Synthesis, IEEE
Transactions on Multimedia
290. P Cheng, Y Chen, M Ding, Z Chen, S Liu, YPP Chen (2023) Deep
Reinforcement Learning for Online Resource Allocation in IoT
Networks: Technology, Development, and Future Challenges, IEEE
Communications Magazine 61 (6), 111-117
289. L Yu, W Xiang, J Fang, YPP Chen, L Chi (2023) eX-ViT: A Novel
explainable vision transformer for weakly supervised semantic
segmentation, Pattern Recognition 142, 109666.
288. W Lan, Y Dong, H Zhang, C Li, Q Chen, J Liu, J Wang, YPP Chen
(2023) Benchmarking of computational methods for predicting circRNA-disease
associations, Briefings in Bioinformatics 24 (1),
bbac613 1 2023
287. T McIntosh, ASM Kayes, YPP Chen, A Ng, P Watters (2023)
Applying staged event-driven access control to combat ransomware,
Computers & Security 128, 103160 2 2023
286. M Luo, Z He, H Cui, YPP Chen, P Ward (2023) Class activation
attention transfer neural networks for MCI conversion prediction,
Computers in Biology and Medicine 156, 106700 1 2023
285. SQ Abbas, L Chi, YPP Chen (2023) DeepMNF: Deep Multimodal
Neuroimaging Framework for Diagnosing Autism Spectrum Disorder Artificial
Intelligence in Medicine 136, 102475 2 2023
284. R Halawani, M Buchert, YPP Chen (2023) Deep learning
exploration of single-cell and spatially resolved cancer
transcriptomics to unravel tumour heterogeneity, Computers in
Biology and Medicine 164, 107274.
Refereed conference papers:
283. Z Song, R Luo, J Yu, YPP Chen, W Yang (2023) Compact
Transformer Tracker with Correlative Masked Modeling , AAAI2023 Full
Accepted Paper, 2023
282. G Sharma, MAP Chamikara, MB Chhetri, YPP Chen (2023) SoK:
Systematizing Attack Studies in Federated Learning–From Sparseness
to Completeness, Proceedings of the 2023 ACM Asia Conference on
Computer and Communications Security, 579-592
|
2022 |
Journals:
281. McIntosh T, Kayes ASM, Chen YPP, Ng A, and Watters P (2022) Ransomware
Mitigation in the Modern Era: A Comprehensive Review, Research
Challenges, and Future Directions. ACM Computing Surveys 54(9),
Dec 2022 Article No.: 197, 1-36
280. Yu L, Xiang W, Fang J, Chen YPP, Zhu R (2022), A
novel explainable neural network for Alzheimer's disease diagnosis,
Pattern Recognition, 131(2022), 108876.
279. Mohammed YA, Chen YPP (2022) A
blockchain-based application for genomic access and variant
discovery using smart contracts and homomorphic encryption,
Future Generation Computer Systems, 137(Dec): 234-247.
278. Lan W, Wu X, Chen Q, Peng W, Wang J, Chen YPP (2022), GANLDA:
Graph attention network for lncRNA-disease associations prediction,
Neurocomputing, 469:384-393.
277. Naz S, Phan KT, Chen YPP (2022) A
comprehensive review of federated learning for COVID-19 detection,
International Journal of Intelligent Systems, 37(3): 2371-2392.
276. Lan W, Dong Y, Chen Q, Zheng R, Liu J, Pan Y, Chen YPP (2022), KGANCDA:
predicting circRNA-disease associations based on knowledge graph
attention network, Briefings in Bioinformatics, 23(1): bbab494.
275. Tran L, Bonti A, Chi L, Abdelrazek M, Chen YPP, (2022) Advanced
calibration of mortality prediction on cardiovascular disease using
feature-based artificial neural network, Expert Systems with
Applications, 203, 1 Oct 2022, 117393.
274. Lan W, Lai D, Chen Q, Wu X, Chen B, Liu J, Wang J, Chen Y-PP
(2022) LDICDL: LncRNA-Disease Association Identification Based on
Collaborative Deep Learning, IEEE/ACM Transactions on Computational
Biology and Bioinformatics, 19(3):1715-1723.
273. Salem OAM, Liu F, Chen YPP, Hamed A, Chen X (2022) Fuzzy joint
mutual information feature selection based on ideal vector, Expert
Systems with Applications,
272. Karri R, Chen YPP, Drummond KJ, Using machine learning to
predict health-related quality of life outcomes in patients with low
grade glioma, meningioma, and acoustic neuroma, PLoS ONE, 17(5 May).
Refereed conference papers:
271. Zhu J, Wang Z, Chen J, Chen YPP, Jiang YG (2022) Balanced
Contrastive Learning for Long-Tailed Visual Recognition, IEEE
Conference on Computer Vision and Pattern Recognition (CVPR), 2022,
Proceedings of the IEEE Conference on Computer Vision and Pattern
Recognition (CVPR), 2022, 6908-6917.
270. Song Z, Yu J, Chen Y-PP, Yang W (2022) Transformer
Tracking with Cyclic Shifting Window Attention, IEEE Conference
on Computer Vision and Pattern Recognition (CVPR), 2022, Proceedings
of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR),
2022, 8791-8800.
|
2021 |
Journals:
269. CY Lee and YPP
Chen (2021), Prediction
of Drug Adverse Events using Deep Learning in Pharmaceutical
Discovery, Briefings in Bioinformatics (In Press).
268. Tang R, Yu Z, Ma Y, Wu Y, Chen YPP, Wong L, Li J (2021) Genetic
source completeness of HIV-1 circulating recombinant forms (CRFs)
predicted by multi-label learning, Bioinformatics (In
Press).
267. Rahmani M, Chen YPP (2021) Tracking
neutrophil migration in zebrafish model using multi-channel feature
learning. IEEE Journal of Biomedical and Health Informatics.
PP:1-9. 2021.
266. Anees A, Dillon T, Wallis S, Chen YPP (2021)
Optimization of day-ahead and real-time prices for smart home
community. International Journal of Electrical Power and
Energy Systems. 124(2021) 106403.
265.
McIntosh T, Watters P, Kayes ASM, Ng A, Chen YPP (2021)
Enforcing situation-aware access control to build malware-resilient
file systems. Future Generation Computer Systems: the
international journal of grid computing: theory, methods and
applications. 115:568-582. 2021
264.
Rabab S, Badenhorst P, Chen YPP, Daetwyler HD (2021)
A template-free machine vision-based crop row detection algorithm.
Precision Agriculture. 2021 (In Press).
263.
N Amin, A McGrath, Chen YPP (2021), FexRNA: Exploratory Data
Analysis and Feature Selection of non-coding RNA, IEEE/ACM
Transactions on Computational Biology and Bioinformatics, (In
Press).
262.
W Lan, D Lai, Q Chen, X Wu, B Chen, J Liu, J Wang, YPP Chen
(2021),
LDICDL:
LncRNA-disease association identification based on Collaborative
Deep Learning, IEEE/ACM Transactions on Computational Biology
and Bioinformatics, (In Press).
261.
Chen Q, Lai D, Lan W,
Wu X, Chen B, Chen YPP, Wang J (2021)
ILDMSF: Inferring
Associations between Long non-coding RNA and Disease Based on
Multi-similarity Fusion, IEEE/ACM Transactions on Computational
Biology and Bioinformatics (In Press).
260. Lan W, Zhu M, Chen Q, Chen B, Liu J, Chen YPP (2021)
CircR2Cancer: a manually curated database of associations between
circRNAs and cancers. Database: the journal of biological
databases and curation. 2021.
259. Abbas SQ, Ahmed F, Chen YPP (2021)
Perceptual image hashing using transform domain noise resistant
local binary pattern. Multimedia Tools and Applications (in
press).
Refereed conference papers:
258. Wang T, Feng N, Yu J, He Y, Hu Y and Chen YPP (2021),
Shot Boundary Detection through Multi-stage Deep Convolution Neural
Network, MMM2021 (Accepted).
|
2020 |
Journals:
257. M Abukari and YPP Chen (2020),
Ensuring privacy and security of genomic data and
functionalities,
Briefings in Bioinformatics, 21(2): 511–526.
256.
Chaudhary C, Goyal P, Prasad DN, and Chen YPP (2020)
Enhancing the
quality of Image Tagging using a Visio-Textual Knowledge Base,
IEEE Transactions on Multimedia,22(4):897-911. .
255.
Chaudhary C, Goyal P, Goyal N, and Chen YPP (2020)
Image Retrieval for Complex Queries Using Knowledge Embedding,
ACM Transactions on Multimedia Computing Communications and Applications 16(1):1-23, March 2020.
254. Anees A, Chen
YPP (2020), Designing
secure substitution boxes based on permutation of symmetric group, Neural
Computing and Applications, 32:7045–7056.
253. Liu F, Khanam S, Chen YPP (2020),
A
human-machine language dictionary. International Journal of
Computational Intelligence Systems. 13:904-913, 2020.
252. Salem OAM, Liu F, Chen YPP, Chen X (2020)
Ensemble Fuzzy
Feature Selection Based on Relevancy, Redundancy, and Dependency
Criteria. Entropy, An International and Interdisciplinary
Journal of Entropy and Information Studies. 22, 757, 2020
251. Liu Z, Chen Q, Lan W, Liang J, Chen YPP, Chen B (2020)
A Survey of Network Embedding for Drug Analysis and Prediction.
Current Protein and Peptide Science. 21. 2020.
250.
Feng N, Song Z, Yu J, Chen YPP, Zhao Y, He Y, Guan T (2020)
SSET: a dataset for shot segmentation, event detection, player
tracking in soccer videos, Multimedia Tools and Applications .
79: 28971–28992(2020).
Refereed conference papers:
249. Scanlan J, Watters P, Eddy A, Fieldhouse M, Thomas T, Fung L,
Tan T, Girdler S and Chen YPP,
Neurodiverse knowledge, skills and ability assessment for cyber
security, 31st 2020 Australasian Conference on Information
Systems (ACIS 2020).
|
2019 |
Journals:
248. N Amin, A McGrath,
Chen YPP (2019),
Evaluation of Deep Learning in non-coding RNA Classification,
Nature Machine Intelligence, 1, (May 2019), 246-256.
247. HF Yang, Chen YPP (2019)
Representation Learning and Empirical Mode Decomposition for Wind
Speed Forecasting Method, Artificial Intelligence, Vol 277, December 2019, 103176.
246. HF Yang, TS Dillon,
E Chang, Chen YPP (2019)
Optimized Configuration of Exponential
Smoothing for Traffic Flow Forecasting,
IEEE Transactions on Industrial Informatics, 15(1): 23-34.
245. CY Lee and Chen YPP
(2019),
Machine learning on adverse drug reactions for pharmacovigilance,
Drug Discovery Today, 24(7): 1332-1343.
244. Anees A, Dillon
T, Chen YPP (2019),
A novel decision strategy for a bilateral energy contract,
Applied Energy, Vol 253, 1 November 2019, 113571.
243. SA Khanam, F Liu,
Chen YPP (2019)
Comprehensive Structured Knowledge Base System
Construction with Natural Language Presentation,
Human-centric Computing and Information Sciences, December 2019, 9:23.
242. Chaudhary C, Goyal P, Tuli S, Banthia S, Goyal N, and Chen YPP
(2019),
A Novel Multimodal Clustering Framework for Images with Diverse
Associated Text, Multimedia Tools and Applications July 2019, Vol 78, 13, 17623�17652
241. Yang HF, Chen YPP
(2019),
Hybrid Deep Learning and Empirical Mode Decomposition Model for Time
Series Applications, Expert Systems With Applications, 120
(15 April 2019): 128-138.
240. Chen Q, Zhe Z, Lan W, Zhang R, Wang Z, Luo C, Chen YPP (2019)
Identifying MiRNA-disease association based on integrating miRNA topological similarity and functional similarity,
Quantitative Biology, 7, (September 2019), 202-209.
239. Wu B, Zhang H, Lin L, Wang H, Gao Y, Zhao L, Chen YPP*, Chen R* and Gu L* (2019)
A Similarity Searching System for Biological Phenotype Images Using Deep Convolutional Encoder-decoder Architecture,
Current Bioinformatics, 14(7), (September 2019), 628-639.
Refereed
conference papers:
238. J Cheng, Chen YPP,
M Li, YG Jiang
(2019),
TC-GAN: Triangle Cycle-Consistent GANs for Face
Frontalization with Facial Features Preserved ,
ACM MM2019 220-228, (Published as a full paper).
237. S Liu, Z Huang, Y Qiu, YPP Chen, W Zhang (2019),
Structural Network Embedding using Multi-modal Deep Auto-encoders for Predicting Drug-drug Interactions,
BIBM2019 (Published as a full paper).
236. Z Liu, F Liu, C Hong, M Gao, YPP Chen, S Liu, W Zhang (2019),
Detection of Cell Types from Single-cell RNA-seq Data using Similarity via Kernel Preserving Learning Embedding,
BIBM2019 (Published as a full paper).
235. Soon L, Chen YPP, Kerr D, Fraser C (2019),
The use of Export Trading Knowledge,
European Conference on Knowledge Management (Published as a full paper).
|
2018 |
Journals:
234.
Anees A, Chen
YPP (2018), Discriminative
binary feature learning and quantization in biometric key generation, Pattern
Recognition, 77(2018): 289-305.
233.
Chiu JKH, Dillon
T, Chen YPP (2018),
Large-Scale
Frequent Stem Pattern Mining in RNA Families, Journal of
Theoretical Biology, 455, 14 October 2018, 131-139.
232. Kourfariotis L.T.,
Chen YPP, Stothard P, Hayes BJ (2018)
Variance explained by whole genome sequence variants in coding and
regulatory genome annotations for six dairy traits, BMC Genomics,
(2018) 19:237.
231. Cheng Z, Zhou
S, Wang Y, Liu H, Guan J,
Chen YPP
(2018),
Effectively identifying compound-protein interactions by learning
from positive and unlabeled examples,
IEEE/ACM Transactions on Computational Biology and
Bioinformatics , 15(6): 1832:1843.
230. Yang SX, Zhen H, Chen
YPP (2018),
GCOTraj: A Storage Approach for Historical
Trajectory Data Sets Using Grid Cells Ordering, Information
Sciences, 459 (2018): 1-19.
228. Zhu Y, Xie ZY, Li
YZ, Zhu M,
Chen YPP
(2018),
Research on
folding diversity in statistical learning methods for RNA secondary
structure prediction, International Journal of Biological
Sciences, 14(8):872-882, 2018.
Refereed
conference papers:
227.
Chaudhary C, Goyal P, and Chen YPP (2018),
Linguistic
patterns and cross modality-based image retrieval for complex
queries, ACM ICMR 2018, accepted as a regular paper, ACM
International Conference on Multimedia Retrieval, June 11-14, 2018,
Yokohama, Japan, pp257-265.
|
2017 |
Journals:
226. Ma CY, Chen YPP,
Berger B, Liao CS (2017),
Identification of Protein Complexes by
Integrating Multiple Alignment of Protein Interaction Networks,
Bioinformatics, 33(11):1681-1688, 2017.
225. Yang HF, Dillon
T, Chen YPP (2017), Optimized
Structure of the Traffic Flow Forecasting Model with a Deep Learning
Approach, IEEE Transactions on Neural Networks and
Learning Systems, 28(10):2371-2381, 2017.
224. Wang T, Chen YPP,
Macleod IM, Pryce JE, Goddard EG, Hayes BJ (2017),
Application of a Bayesian non-linear Model Hybrid Scheme to Sequence
Data for Genomic Prediction and QTL Mapping, BMC Genomics,
18(618):1-23, 2017.
223.
Chiu JKH,
Chen YPP
(2017), A
Comprehensive Study of RNA Secondary Structure Alignment Algorithms, Briefings
in Bioinformatics,
18(2): 291-305,
2017.
222. Chen Q, Lan C, Zhao L, Wang J,
Chen B, Chen YPP (2017),
Recent Advances in Sequence
Assembly: Principles and Applications,
Briefings in Functional Genomics,
16(6), 2017, 361-378.
Refereed
conference papers:
220.
Chaudhary C, Goyal P, and Chen YPP (2017),
Exploiting Visual
and Textual Neighborhood Information to Improve Image-Tag Relevance,
2017 IEEE International Conference on Big Data (Big Data 2017),
(Accepted as a regular paper), pp566-575, 18% acceptance rate,
December 11-14, 2017, Boston, MA, USA.
|
2016 |
Journals:
219. Begley
S, Zhen H, Chen YPP (2016), PaMeCo
Join: A Parallel Main Memory Compact Hash Join, Information
Systems, 58:105-125,
2016.
218. Wang T, Chen YPP, Bowman P, Goddard M, Hayes B (2016),
A hybrid expectation maximisation and MCMC sampling algorithm to
implement Bayesian mixture model based genomic prediction and QTL
mapping, BMC Genomics, 17(1): 1-21, 2016.
217. Yang SX, Zhen H, Chen YPP (2016), Workload-based
Ordering of Multi-dimensional Data, IEEE
Transactions on Knowledge and Data Engineering, 28(3):831-844,
2016.
216. Chen Q, Chen YPP, Zhang C (2016), Interval-Based
Similarity for Classifying Conserved RNA Secondary Structures, IEEE
Intelligent Systems, 31(3):78-85,
2016.
215. Anees A, Chen YPP (2016),
True real time pricing and
combined power scheduling of electric appliances in residential
energy management system,
Applied Energy, 165 (2016) 592-600.
214. Zhang B, Han
D, Korostelev Y, Yan Z, Shao N, Khrameeva E, Velichkovsky BM,
Chen YPP, Gelfand MS and Khaitovich P (2016),
Changes in snoRNA and snRNA abundance in the human, chimpanzee,
macaque and, mouse brain,
Genome Biology and Evolution,
8(3):
840-850,
2016.
|
2015 |
Journals:
212. Chiu JKH,
Chen YPP (2015),
Pairwise RNA Secondary Structure Alignment with Conserved Stem
Pattern,
Bioinformatics, 31(24):3914-3921, 2015.
211. Chiu JKH,
Chen YPP (2015),
Efficient conversion of RNA pseudoknots to knot-free structures
using a graphical model, IEEE Transactions on Biomedical
Engineering, 62(5), 1265-1271, 2015.
210. Rajasekaran R, Chen YPP
(2015),
Potential Therapeutic Targets and the Role of Technology in Developing
Novel Antileishmanial Drugs, Drug Discovery Today,
20(8): 958-968, 2015.
209. Kourfariotis L, Chen YPP, Chamberlian A, Vanderjagt C, Hayes
B (2015),
A catalogue of novel bovine long noncoding RNA across 18
tissues, PLoS ONE,
10(10): e0141225. doi:10.1371/journal.pone.0141225, 2015.
208. Chen Q, Luo H,
Zhang C, Chen YPP (2015),
Bioinformatics in Protein Kinases Regulatory Network and Drug
Discovery, Mathematical Biosciences, 262, 147-156,
2015.
207. Wang TT, Chen YPP,
Goddard M, Meuwissen T, Kemper KE, Hayes B (2015),
A
Computationally Efficient Algorithm for Genomic Prediction Using a
Bayesian Model, Genetics Selection Evolution,
47(1):34, 2015.
206. Lee H, Chen YPP (2015),
Image Based Computer Aided Diagnosis System for Cancer Detection,
Expert Systems with Applications, 42(12),
5356-5365,
2015.
205. Yang HF, Chen YPP
(2015),
Data Mining in Lung Cancer Pathologic Staging Diagnosis: Correlation
between Clinical and Pathology Information, Expert Systems
With Applications, 42(15-16):6168-6176, 2015.
204. Simpson A,
El-Refaie
A, Stephenson C, Chen YPP, Deng D, Erickson S, Tay D, Morris
ME, Doube W and Caelli T (2015),
Computer-Based Rehabilitation for Developing Speech and Language in
Hearing-Impaired Children: A Systematic Review, Deafness &
Education International, 17(2):111-119, 2015.
|
2014 |
Journals:
203. Kalyaanamoorthy S, Chen YPP (2014),
A steered molecular dynamics mediated hit discovery for histone
deacetylases, Physical Chemistry Chemical Physics, 16(8), 3777-3791,
2014.
202. Zhu W, Chen YPP (2014)
Computational developments in microRNA-regulated protein-protein
interactions, BMC Systems Biology, 2014, 8:14.
201. Liu Q, Chen YPP,
Li J (2014),
k-Partite Cliques of Protein Interactions: A Novel Subgraph Topology
for Functional Coherence Analysis on PPI Networks, Journal
of Theoretical Biology, 340:146�154, 2014.
200. Kourfariotis L.,
Chen YPP, Sunduimijid B, Hayes BJ (2014)
Regulatory and coding genome regions are enriched for trait
associated variants in dairy and beef cattle, BMC Genomics,
15:436,
2014.
199. Kalyaanamoorthy S, Chen YPP (2014),
Modelling and enhanced molecular dynamics to steer structure-based
drug discovery, Progress in Biophysics and Molecular
Biology, 114(3):123�136, 2014.
198. Lee H, Chen YPP
(2014)
Cell Cycle Phase Detection with Cell Deformation Analysis,
Expert Systems with Applications, 41(6):2644�2651, 2014.
197. Lee H, Chen YPP
(2014)
Skin Cancer Extraction with Optimum Fuzzy Thresholding Technique,
Applied Intelligence, 40(3): 415-426, 2014.
196. Lee H, Chen YPP
(2014)
Cell Morphology Based Classification for Red Cells in Blood Smear
Images, Pattern Recognition Letter, 49:155�161,
2014.
194. Chuang CH, Cheng
SC, Chang CC, Chen YPP (2014),
Model-Based Approach to Spatial-Temporal Sampling of Video Clips for
Video Object Detection by Classification, Journal of
Visual Communication and Image Representation,
25(5):1018�1030, 2014.
193. Chen F, Zhang Y,
Chen YPP (2014)
Subdividing Globally Important Zones Based on Data Distribution
across Multiple Genome Fragments, Computers in Biology and
Medicine, 48:109�118, 2014.
192. Chen F, Lia Z,
Chen YPP (2014),
Determining Common Insertion Sites Based on Retroviral Insertion
Distribution across Tumors, Computational Biology and
Chemistry, 51:83�92, 2014.
191. Zhu W, Hou J,
Chen YPP (2014),
Select Cluster Features for Better Layered Protein Function
Prediction, Current Bioinformatics 9(3): 306-314,
2014.
|
2013 |
Journals:
190. Mazin P, Xiong J,
Liu X, Yan Z, Zhang X, Li M, He L, Somel M, Yuan Y, Chen YPP,
Li N, Hu Y, Fu N, Ning Z, Zeng R, Yang H, Chen W, Gelfand M and
Khaitovich P (2013),
Widespread splicing changes in human brain development and
aging, Molecular Systems Biology,9:633, 2013.
189. Li Z, Bammann H, Li
M, Liang H, Yan Z, Chen YPP, Zhao M. and Khaitovich P (2013),
Evolutionary and ontogenetic changes in RNA editing in human,
chimpanzee, and macaque brains, RNA 2013
19:1693-1702.
188. Yuan Y, Yang L, Shi
M, Lu D, Lou H, Chen YPP, Jin L, Xu S (2013),
Identification of Well-Differentiated Gene Expressions between Han
Chinese and Japanese Using Genome-Wide Microarray Data Analysis,
Journal of Medical Genetics, 50(8):534-42, 2013.
187. Cheng SC, Cheng KY, Chen YPP
(2013),
GHT-Based Associative Memory Learning and Its Application to Human
Action Detection and Classification, Pattern Recognition,
46(11):3117�3128, 2013.
186. Kalyaanamoorthy
S, Chen YPP (2013),
Ligand release mechanisms and channels in histone deacetylases.
Journal of Computational Chemistry 34(26): 2270-2283,
2013.
185. Kalyaanamoorthy S, Chen YPP (2013),
Energy based pharmacophore mapping of HDAC inhibitors against class
I HDAC enzymes, BBA - Proteins and Proteomics,
1834(1):317-328, 2013.
184. Kalyaanamoorthy S, Chen YPP (2013),Quantum
polarized ligand docking investigation to understand the
significance of protonation states in histone deacetylase inhibitors,
Journal of Molecular Graphics and Modelling, 44:44�53,
2013.
183. Lee CC, Chen YPP,
Yao TJ, Lo WC, Lyu PC, Tang CY and Ma CY (2013),
GI-POP: A combinational annotation and Genomic Island prediction
Pipeline for Ongoing microbial genome Projects, Gene,
518:114-123, 2013.
182. Nahar J, Imam
T, Tickle K, and Chen YPP (2013), "Computational
Intelligence for Heart Disease Diagnosis: A Medical Knowledge Driven
Approach", Expert Systems With Applications,
40(1):96-104, 2013.
181. Nahar J, Imam
T, Tickle K, and Chen YPP (2013), "Association
Rule Mining to Detect Factors which contribute to Heart Disease in
Males and Females", Expert Systems With Applications,
40(4):1086-1093, 2013.
180. Nguyen T,
Zhen H,
Chen YPP
(2013),
SeTPR*-tree: Efficient Buffering for Spatiotemporal Indexes Via
Shared Execution,
The Computer Journal, 56(1):115-137, 2013.
179. Zhu W, Hou J, Chen YPP
(2013),
Semantically Predicting Protein Functions Based on Protein
Functional Connectivity, Computational Biology and
Chemistry, 44: 9-14, 2013.
178. Song X, Wang M,
Chen YPP (2013), Wang H, Han P, Sun H:
Prediction of pre-miRNA with multiple stem-loops using pruning
algorithm. Computers in Biology and Medicine.
43(5):409-416, 2013.
177. Hou J, Zhu W,
Chen YPP (2013),
Dynamically predicting protein functions from semantic associations
of proteins, Network Modeling Analysis in Health
Informatics and Bioinformatics, 2(4):175-183, 2013.
|
2012 |
Journals:
176. Yuan Y, Chen YPP, Boyd-Kirkup J, Khaitovich P and Somel M
(2012),
Accelerated aging-related transcriptome changes in the female
prefrontal cortex, Aging Cell, 11(5):894-901,
2012.
175. Kalyaanamoorthy S, Chen YPP (2012),
Exploring Inhibitor Release Pathways in Histone Deacetylases Using
Random Acceleration Molecular Dynamics Simulations, Journal
of Chemical Information and Modeling, 52(2): 589�603, 2012.
174. Lee CC, Lo WC, Lai SM, Chen YPP
(2012),
Tang CY and Lyu PC,
Metabolic classification of microbial genomes using functional
probes, BMC Genomics, 13:157, 2012.
173. Chiu JKH,
Chen YPP (2012),
Conformational Features of Topologically Classified RNA Secondary
Structures, PLoS ONE, 7(7):e39907, 2012.
172. Zhu W, Hou J, and Chen YPP (2012),
Exploiting Multi-Layered Information to Iteratively Predict Protein
Functions, Mathematical Biosciences, 236(2):108�116, 2012.
171.
Chen Q, Chen YPP (2012),
Discovering Inhibition Pathways for Protein Kinases. IEEE
Intelligent Systems, 27(5):19-26, 2012.
170.
Song X, Cheng L, Zhou T, Guo X, Zhang X, Chen YPP, Han
P, Sha J (2012),
Predicting miRNA-mediated gene silencing mode based on miRNA-target
duplex features, Computers in Biology and Medicine,
42(1):1�7, 2012.
169. Nahar J, Imam
T, Tickle K, Ali S and Chen YPP (2012), "Computational
Intelligence for Microarray Data and Biomedical Image Analysis for
the Early Diagnosis of Breast Cancer", Expert Systems With
Applications, 39:12371�12377, 2012.
168.
Rajasekaran R, Chen YPP
(2012),
Probing the structure of Leishmania major DHFR TS and structure
based virtual screening of peptide library for the identification of
anti-leishmanial leads, Journal of Molecular Modeling,
18(9):4089-4100, 2012.
167. Gotoh Y, Yoshihisa T,
Taniguchi H, Kanazawa M, Rahayu W, and Chen YPP (2012),
"A Scheduling Method to Reduce Waiting Time for Close-range
Broadcasting'', Mobile Information Systems Journal
(MOBIS), Vol.8, Issue.4, pp.303-314, 2012.
Refereed
conference papers:
166.
Begley S, Zhen H, Chen YPP (2012), �MCJoin:
A memory-constrained join for column-based main-memory databases�,
Proceedings of the ACM SIGMOD 39th International Conference on
Management of Data, SIGMOD 2012, 121-165. Scottsdale,
Arizona, USA, 20-24 May 2012.
164. Gotoh Y, Yoshihisa T,
Taniguchi H, Kanazawa M, Rahayu W, and Chen YPP (2012),
"A
Scheduling Method for Node Relay-based Webcast Considering
Reconnection'' 26th IEEE International Conference on Advanced
Information Networking and Applications (AINA-2012), 787-794,
Fukuoka, Japan, 26-29 March 2012.
|
2011 |
Journals:
163.
Chen Q, Chen YPP (2011),
Modeling Conserved Structure Patterns for Functional Noncoding RNA.
IEEE Transactions on Biomedical Engineering,
58(6):1528-1533, 2011.
162.
Chen Q, Li G, Chen YPP (2011),
Interval-Based Distance Function for Identifying RNA Structure
Candidates, Journal of Theoretical Biology,
269(8):280-286, 2011.
161.
Yang L, Zhen H, Chen YPP, Nguyen T (2011),
External Sorting on Flash Memory Via Natural Page Run Generation,
The Computer Journal, 54(11):1882-1990, 2011.
160. Yuan Y, Chen YPP,
Ni S, Xu AG, Tang L, Vingron M, Somel M, Khaitovich P (2011),
Development and application of a modified dynamic time warping
algorithm (DTW-S) to analyses of primate brain expression time
series, BMC Bioinformatics, 12:347, 2011.
159. Kalyaanamoorthy S, Chen YPP (2011),
Structure-based drug design to augment hit discovery, Drug
Discovery Today, 16(17-18):831-839, 2011.
158. Xi
Y, Chen YPP, Qian
C., Wang F
(2011),
Comparative study of computational methods to detect the correlated
reaction sets in biochemical networks, Briefings in
Bioinformatics
12(2):132-150, 2011.
157. Nahar J, Tickle
K, Ali S. Chen YPP (2011),
Significant Cancer Prevention Factor Extraction: An Association Rule
Discovery Approach, Journal of Medical Systems
35(3):353-367, 2011.
156.
Chen Q, Chen YPP (2011),
Mining Protein Kinases Regulation using Graphical Models. IEEE Transactions on NanoBioscience, 10(1):1-8, 2011.
155.
Song XF, Han P, Chen YPP (2011),
Genetic variation of the hemagglutinin of Avian influenza Virus H9N2,
Journal of Medical Virology, 83(5):838-46, 2011.
154.
Chen Q, Chen YPP (2011),
Function Annotation for Pseudoknot using Structure Similarity.
IEEE/ACM Transactions on Computational Biology and
Bioinformatics, 8(6):1535-1544, Nov-Dec 2011.
153.
Wang TT, Chen F. Chen YPP (2011),
Ranking Inter-Relationships between Clusters,
International Journal of Systems Science, 42(12):2071-2083,
2011.
Refereed
conference papers:
152. Gotoh Y, Yoshihisa T,
Taniguchi H, Kanazawa M, Rahayu W, and Chen YPP (2011), "A Method to Reduce Waiting Time for Close-range
Broadcasting." The 9th International Conference on Advances in
Mobile Computing and Multimedia (MoMM 2011), Ho Chi Minh City,
Vietnam, vol. MoMM 2011, 116-122.
151. Song XF, Wang
M, Chen YPP, and Ping H (2011), "Identifying multiple
stem-loops pre-miRNA using support vector machine." The 2011 IEEE
International Conference on Bioinformatics and Biomedicine Workshops
(BIBMW 2011), Atlanta, Georgia, USA, vol. BIBMW 2011, 446-448.
150. Wang HW, Wu
WK, Pai TW, Chen YPP, and Chang MDT (2011), "Impact
of complex formation on predicting conformational epitopes." The 2nd IASTED International Conference on Computational Bioscience, CompBio
2011, Cambridge, United Kingdom, vol. CompBio 2011, 284-290.
|
2010 |
Journals:
149.
Chen F, Chen YPP (2010)
Exploring Cross-species Related miRNAs Based on Sequence and
Secondary Structure, IEEE Transactions on Biomedical
Engineering 57(7)1547�1553, 2010.
148. Chen Q, Chen YPP
(2010)
Mining Characteristic Relations Bind to RNA Secondary Structures,
IEEE Transactions on Information Technology in Biomedicine,
14(1):10-15,
2010.
147.
Zhu W, Hou J, and Chen YPP (2010)
Semantic and layered protein function prediction from PPI networks,
Journal of Theoretical Biology, 267(2):129-136, 2010.
144. Chen F, Chen YPP
(2010)
Exploring the ncRNA-ncRNA patterns based on bridging rules.
Journal of Biomedical Informatics 43(4):569-577, 2010.
143. Jiang D, Zhou S,
Liu H, Chen YPP (2010)
Inferring minimal feasible metabolic networks of Escherichia coli,
Applied Biochemistry and Biotechnology, 160(1):222-231, 2010.
142. Tjondronegoro, D, Chen YPP,
Knowledge-discounted Event Detection in Sports Video, IEEE
Transactions on Systems Man & Cybernetics, Part A.
40(5):1009-1024, 2010.
141. An J,
Choi
KP, Wells CA, Chen YPP (2010), Identifying co-regulating microRNA Groups, Journal of Bioinformatics and Computational Biology.
8(1):99-115, 2010.
140. Sajjanhar A, Lu G,
Zhang D, Hou J, Zhou W, Chen YPP (2010), Spectral Shape
Descriptor using Spherical Harmonics, Integrated
Computer-Aided Engineering 17:1�7, 2010.
139. Zhang Z, Chen YPP (2010) Guest Editors' Introduction. International
Journal of Software Engineering and Knowledge Engineering
20(8):1043-1044, 2010.
Book Chapter
138.
Chen F, Chen YPP (2010),
Pattern recognition for genomics context, Pattern Recognition and
Machine Vision, Chapter 7, editor by Patrick S.P. Wang, River
Publishers. 105-118, 2010.
137. Chen YPP,
Ivanova E, Carloni P, Wang F (2010), Bioinformatics and its
applications, in Comprehensive Natural Products II: Chemistry and
Biology, Eds., Lewis N. Mander and Hung-wen (Ben) Liu, pp569-593
(Elsevier, 2010).
|
2009 |
Journals:
136.
Chen Q. Chen YPP (2009),
Discovery of Structural and Functional Features in RNA Pseudoknots,
IEEE Transactions on Knowledge and Data Engineering,
21(7):974-984, 2009.
135.
Xi Y, Chen
YPP, Cao M, Wang
W and Wang F (2009),
Analysis on relationship between extreme pathways and correlated
reaction sets. BMC Bioinformatics, 10(S1):S58,
2009.
134. Jiang D, Zhou S,
Chen YPP (2009),
Compensatory ability to null mutation in metabolic networks,
Biotechnology and Bioengineering,
103(2):361-369, 2009.
133.
Song XF, Chen WM,
Chen YPP, Jiang
B (2009),
Candidate Working Set Strategy based SMO Algorithm in Support Vector
Machine,
Information
Processing & Management 45(5): 584-592,
2009.
132. Rong J, Li G, Chen YPP (2009),
Acoustic Feature Selection for Automatic Emotion Recognition from
Speech. Information Processing & Management,
45(3):315-328,
2009.
131.
An
J, Chen YPP
(2009),
Finding Coverage Using Incremental Attribute Combinations,
International Journal of Innovative Computing, Information and
Control,
5(5):1419-1428,
2009.
130.
An
J, Chen YPP
(2009),
Finding rule groups to classify high dimensional gene expression
datasets, Computational Biology and Chemistry
33(1):108-113,
2009.
Book Chapters
129.
Chen YPP, Rong J,
Li G (2009), Advanced Graph Mining Methods
for Protein Analysis. Biological Data Mining. Edited by Jake Y.
Chen, Stefano Lonardi, Chapter 6, Chapman & Hall/CRC Press, 111-132.
Lecture Notes in Computer Science/Artificial
Intelligence:
128.
Sajjanhar A, Lu
G, Zhang D, Hou
J, Chen YPP (2009),
Spherical Harmonics and Distance Transform for Image Representation
and Retrieval, E. Corchado and H. Yin (Eds.),
Lecture Notes in Computer Science, Volume 5788, pp. 309-316, 2009.
Refereed
conference papers:
127.
Liu Q, Chen YPP, Li J (2009), High
functional coherence in k-partite protein cliques of protein
interaction networks, Proceedings of 2009
IEEE International conference on Bioinfomratics and Biomedicine,
page 111-117. Washington D.C., USA. 1-4 November 2009.
126.
Nahar J., Tickle K, Ali S.
Chen YPP (2009),
Early Breast Cancer Identification: Which Way to Go?
Microarray or Image Based Computer Aided Diagnosis!,
2009 Third International Conference on Network and System Security,
pp456-461. 2009.
125.
Hou J, Chen YPP (2009), Data Pre-Processing
for More Effective Gene Clustering, The
2009 International Joint Conference on
Computational Sciences and Optimization
(CSO 2009), Sanya,
Hainan, China, April 24-26, 2009.
|
2008 |
Journals:
124.
Chen YPP,
Chen F (2008),
Using Bioinformatics Techniques for Gene Identification in Drug
Discovery and Development, Current Drug Metabolism,
9(6):567-573, 2008.
123.
Knapp K, Chonka A, and Chen YPP (2008),
POEM, a 3-Dimensional Exon Taxonomy and Patterns in Untranslated
Exons, BMC Genomics, 9:428, 2008.
122.
An J, Chen YPP (2008),
Finding Edging Genes From Microarray Data, Journal of
Biotechnology, 135(3):233-240,
2008.
121. Chen YPP,
Chen F (2008),
Identifying Targets for Drug Discovery
using Bioinformatics,
Expert Opinion on Therapeutic Targets,
12(4):383-389, 2008.
120.
Tjondronegoro D, Chen YPP,
Joly A (2008),
A Scalable and Extensible Segment-Event-Object based Sports Video
Retrieval System,
ACM Transactions on Multimedia Computing, Communications and
Applications, 4(2):13:1-13:40,
2008. [PDF].
119. Chen Q, Zhang S.
Chen YPP (2008),
Rule-based dependency
models for security protocol analysis, Integrated Computer-Aided Engineering 15:369-380,
2008.
Refereed
conference papers:
116. Lukman S, Sim K,
Li J and Chen YPP (2008),
Interacting Amino Acid Preferences of 3D Pattern Pairs at the
Binding Sites of Transient and Obligate Protein Complexes,
The Sixth Asia Pacific Bioinformatics Conference
(APBC2008), 14-17 January 2008 Kyoto, Japan.
115.
Sajjanhar
A, Lu G, Zhang
D, Zhou W and Chen YPP (2008),
Image Retrieval Based On Semantics of Intra-Region Color Properties,
IEEE 8th International Conference on Computer and Information
Technology, 8-11 July 2008,
Sydney Australia.
|
2007 |
Journals:
114.
Knapp K. Chen YPP (2007),
An Evaluation of Contemporary Hidden Markov Model Genefinders with a
Predicted Exon Taxonomy, Nucleic Acids Research,
35: 317-324, 2007. [pdf]
113.
Mann S., Li J., Chen YPP (2007),
A pHMM-ANN based discriminative approach to promoter identification
in prokaryote genomic contexts, Nucleic Acids Research
35: e12 1-7, 2007. [pdf]
112.
Chen Q,
Chen YPP and
Zhang C (2007),
Detecting Inconsistency in Biological Molecular Databases using
Ontology, Data Mining and Knowledge Discovery
15:275-296, 2007.
[pdf]
111.
An
J. Yu JX, Ratanamahatana CA, Chen YPP (2007),
A Dimensionality Reduction Algorithm and Its Application for
Interactive Visualization, Visual Languages and Computing,
Elsevier Science 18:48-70,
2007.
[pdf]
110.
Chen
Y, Timms P and Chen YPP (2007),
CIDB: Chlamydia Interactive Database for cross-querying genomics,
transcriptomics and proteomics data, Biomolecular
Engineering. 24(6):603-608, 2007.[pdf]
109.
Nahar J., Ali S. Chen YPP (2007),
Microarray Data Classification Using Automatic SVM Kernel Selection,
DNA and Cell Biology,
26(10):707-712, 2007.
[pdf]
108.
Nahar J.,
Chen YPP, Ali S
(2007), Kernel Based Naive Bayes Classifier for Breast Cancer
Prediction, Journal of Biological Systems, 15(1):17-25, 2007.
Lecture Notes in Computer Science/Artificial
Intelligence:
107.
Chen YPP, Qin Q, Chen Q (2007), Learning Dependency Model for
AMP-activated Protein Kinase Regulation, Lecture Notes in Artificial
Intelligence, 4798: 221-229,
2007.
106.
Chen Q, Zhang S, Chen YPP (2007),
Identifying Dependency between Secure Messages for Protocol
Analysis, Lecture Notes in Artificial Intelligence: 4798:
30-38, 2007.
Refereed
conference papers:
105.
Nahar J,
Chen YPP, Ali S (2007), Microarray Classification and Rule Based Cancer Identification,
Proceedings of International Conference on
Information and Communication Technology (ICICT 2007) March 7-9,
Dhaka, IEEE, pp 43-46, 2007.
104.
Sunramaniam C, An J, Gubbi
J, Chen YPP (2007),
Finding Motifs in miRNA Sequences,
Proceedings of The Sixth
International Conference on Computer and Information Science (ICIS
2007), Melbourne, Australia.
IEEE CS pp. 507-512, 11-13 July 2007.
103
Rong J, Chen YPP, Chowdhury
M, Li G
(2007), Acoustic
Features Extraction for Emotion Recognition,
Proceedings of The Sixth
International Conference on Computer and Information Science (ICIS
2007), Melbourne, Australia.
IEEE CS, pp. 419-424, 11-13 July 2007.
102.
Chen Q, Zhang C. Chen YPP (2007), Probabilistic Reasoning of
Inconsistent Belief in Protocol Analysis,
Proceedings of 2007 International Conference on Intelligent
Systems and Knowledge Engineering (ISKE2007), Chengdu, China, 2007.
101.
Knapp
K, Rahaman A, Chen YPP
(2007), Non-Quantized Minimum Free Energy in Untranslated Region
Exons,
Proceedings of
Computational Structural
Bioinformatics Workshop (CSBW) is held in conjunction with the IEEE
International Conference on Bioinformatics and Biomedicine (BIBM
2007) IEEE, pp. 32-37, 2007.
|
2006 |
Journals:
100. Chen Q. Chen
YPP (2006),
Mining Frequent Patterns for AMP-activated Protein Kinase Regulation
on Skeletal Muscle, BMC Bioinformatics 7:394, 2006.
[pdf]
99.
Chen YPP,
Prompramote S, Maire F (2006), MDSM: Microarray Database Schema
Matching By Using Hungarian Method ,
Information Sciences,
176:2771-2790, 2006. [pdf]
98.
Lopez C., Chen YPP (2006), Using
Object and Trajectory Analysis to Facilitate Indexing and Retrieval
of Video, Knowledge-Based Systems Journal, 19(8):639-646, 2006.
[pdf]
97.
Lau RYK, Tang M,
Wong O,
Milliner SW, Chen
YPP (2006),
An
evolutionary learning approach for adaptive negotiation agents
,
International Journal of Intelligent Systems, 21(1):41-72,
2006. [pdf]
96.
Chen YPP, Hwang MJ, Lee SK, Wong L (2006), Bioinformatics in
Asia Pacific, Asia Pacific Biotech
News, (10):24, 2006.
95. Shi W, Zhou W, Chen YPP
(2006),
Statistical Analysis of TATA Box and Its Extensions in the Promoters
of Human Genes, Current Bioinformatics,
1(3):337-345, 2006.
94. Chen YPP and
Chua TS (2006), Introduction: Multimedia
Modelling
.
The Visual Computer, 22:1�2, 2006.
Books:
93.
Jiang T, Yang
UC, Chen
YPP, and Wong L
Editors (2006)
Proceedings of the 4th Asia-Pacific Bioinformatics Conference,
Imperial College Press, London, February 2006.
Advances in Bioinformatics & Computational Biology
Vol 3 Feb 2006, by Imperial College
Press.
Lecture Notes in Computer Science/Artificial
Intelligence:
92. An J. Chen YPP
(2006), A similarity search algorithm to predict protein structures,
10th International Conference on Knowledge-Based & Intelligent
Information & Engineering Systems (KES2006)
,
UK. Lecture Notes in Computer Science,
LNCS 4252 Springer-Verlag, pp. 1305-1312,
9-11
October 2006.
91.
Chen Q, Chen YPP, Zhang C
and Li L.(2006), Mining Frequent Itemsets
for Protein Kinase Regulation,
Lecture Notes in Computer Science, LNCS4099, The 9th Pacific
Rim International Conference on Artificial Intelligence,
Springer-Verlag, pp222-230, 2006.
90. Chen Q,
Chen YPP, Zhang C, Zhang S (2006), Detecting Collusion Attacks in
Security Protocols, The Eighth Asia Pacific Web Conference
January (APWeb2006) 16-18, Harbin,
China. Lecture Notes in Computer Science,
LNCS3841. pp297-306, 2006.
Refereed
conference papers:
89. An J,
Chen YPP (2006),
Finding Rule Groups
to Classify High
Dimensional Gene
Expression Datasets,
The 18th International Conference on Pattern Recognition 2006
(ICPR2006) 20 - 24 August 2006, Hong Kong,
IEEE CS Press, pp1196-1199. (Tier A)
88. An J,
Chen YPP (2006),
Finding Short Patterns to Classify Text
Documents, The 2006 IEEE/WIC/ACM International Conference on Web
Intelligence (WI-06) 18 - 22
Dec 2006, Hong Kong,
IEEE CS Press.
87. Chen YPP,
Chen Q (2006), Analyzing Inconsistency Toward Enhancing Integration
of Biological Molecular Databases, Proceedings of the fourth
Asia-Pacific Bioinformatics Conference (APBC2006) Taipei Taiwan, pp197-206,
13-16 Feb 2006.
86. Tjondronegoro D, Chen YPP (2006),
Using Decision-Tree to
Automatically Construct Learned-Heuristics for Events Classification
in Sports Video
. IEEE International Conference on Multimedia & Expo (ICME2006) IEEE
CS Press, Toronto, Canada, pp1465-1468, July 9-12, 2006, .
85. Tjondronegoro D, Chen YPP (2006),
Towards Universal and
Statistical-Driven Heuristics for Automatic Classification of Sports
Video Events
. the 12th International Multimedia Modelling Conference (MMM2006)
IEEE Press, pp43-50, 2006.
84. Tjondronegoro D, Chen
YPP, Pham B (2006),
Extensible Detection and Indexing of Highlight Events in Broadcast
Sports Video Towards Universal and Statistical-Driven Heuristics for
Automatic Classification of Sports Video Events
. The 29th Australasian Computer Science Conference-2006 (ACSC2006)
Hobart, TAS, Australia, pp237-246, 2006.
83.
An J, Chen YPP (2006),
Depth First Rule Generation for Text Categorization ,
Proceedings of The Fourth
International Conference on Active Media
Technology (AMT 2006),
Brisbane Australia, pp.302-306, June 7-9
2006.
82.
Subramaniam
C, An J., Chen YPP (2006), Microarray Analysis for Gene Expression that involves Trace Metals
,
Proceedings of The Fourth
International Conference on Active Media
Technology (AMT 2006),
Brisbane Australia pp211-216, June 7-9 2006.
81.
Morrison
D,
Saijanhar A, Hou
J,
Chen YPP
(2005) Providing
Real-Time Information Services for Public Bus Commuters ,
Proceedings of The Fourth
International Conference on Active Media
Technology (AMT 2006),
Brisbane Australia pp384-387, June 7-9, 2006.
|
2005 |
Journals:
80.
An J., Chen YPP CHEN H.
(2005),
DDR: An Index Method for Large Time Series Datasets ,
Information Systems,
(30)5:333-348, 2005.
[pdf]
79.
Zhang
C, Chen YPP, Zhang S,
Chen Q
(2005),
Mining Inconsistent Secure Messages Toward Analyzing Security
Protocol, The International
Journal of Intelligent Control and Systems
(IJICS) 10(1):77- 85, 2005.
78.
Garcia A, Chen YPP, Ragan MA (2005),
Information Integration in Molecular Bioscience,
Applied Bioinformatics, 4(3):157-173, 2005.
77. Chen YPP
(2005), Advanced Techniques for Bioinformatics . The Journal of
Bioinformatics & Computational Biology, 3(1):99-102,
2005.
Books:
76. Chen YPP,
Ed.,
Bioinformatics Technologies,
Springer
- Jan 2005.
75.
Chen YPP, and Wong L. Editors
(2005),
Proceedings of the Third Asia-Pacific
Bioinformatics Conference, Advances in
Bioinformatics & Computational Biology Vol 1 Jan
2005, by Imperial College Press.
74.
Chen YPP, Ed (2005),
Multimedia Modelling, Proceedings of the 11th
International Multimedia Modelling Conference, IEEE CS Press.
Book Chapters
73.
Chen YPP (2005), Introduction to Bioinformatics.
Bioinformatics Technologies, edited by Y.-P. Phoebe CHEN
Chapter 1, pages 1-14, Springer,
pp1-13, 2005.
72.
Prompramote S,
Chen Y, Chen YPP (2005), Machine Learning in
Bioinformatics , Bioinformatics Technologies, edited by Y.-P. Phoebe
CHEN Chapter 5, pages 117-154, Springer,
pp117-153, 2005.
71.
Shi W, Zhou W, Chen YPP (2005), Biological Sequence
Assembly and Alignment , Bioinformatics Technologies, edited by
Y.-P. Phoebe CHEN chapter 8, pages 243-262, Springer,
pp241-261, 2005.
69.
Tse B, Hume D, Chen YPP (2005), Pattern Matching
for Motifs , Bioinformatics Technologies, edited by Y.-P. Phoebe
CHEN Chapter 10, pages 299-312, Springer, pp299-312,
2005.
68.
Yu ZG, Anh V, Chen YPP (2005), Visualization
and Fractal Analysis of Biological Sequences , Bioinformatics
Technologies, edited by Y.-P. Phoebe CHEN Chapter 11, pages
313-352, Springer, pp313-351, 2005.
67.
Liew AWC, Yan H, Yang M, Chen YPP (2005), Microarray Data Analysis , Bioinformatics Technologies, edited by
Y.-P. Phoebe CHEN Chapter 12, pages 353-388, Springer,
pp353-388, 2005.
Lecture Notes in Computer Science/Artificial
Intelligence:
66.
An J, Chen YPP,
Xu Q and Zhou
X (2005), A New
Indexing Method for High Dimensional Dataset , Database Systems
for Advanced Applications (DASFAA2005)
Lecture Notes in Computer Science,
LNCS3453, Springer-Verlag, pp385-397,
2005.
(Tier A)
65. Tjondronegoro D , Chen YPP (2005), Multi-level Semantic Analysis for Sports Video . Knowledge-Based
Intelligent Information and Engineering Systems
(KES). Lecture Notes in Computer
Science,
LNCS3682, Springer pp24-30, 2005.
64.
An J, Chen YPP (2005), Yet Another Induction Algorithm ,
Knowledge-Based & Intelligent Information & Engineering Systems
(KES) Lecture Notes in Computer Science,
LNCS3682, Springer, pp37-44, 2005. [PDF]
63.
Chen Q,
Chen YPP,
(2005),
Analyzing Security Protocols using Association Rule Mining, The
18th Australian Joint Conference on Artificial Intelligence, Sydney
Australia,
Lecture Notes in Artificial
Intelligence LNAI3809.
Springer-Verlag, pp 245-253,
5-9 December 2005.
Refereed
conference papers:
62.
Tjondronegoro
D, Chen YPP and Pham B (2005), Extraction and Classification of Self-consumable Sport Video
Highlights , in Proceedings of The ACM
MM2005, Singapore, 2005. (Tier A+)
61.
Garcia A, Thoraval S, Garcia
LJ, Chen YPP, Ragan MA, (2005),
Bioinformatics workflows: G-PIPE as an implementation, Fifth
workshop on Workflow Managements: new abailities for the biological
information overview, Naples, Italy. pp61-64, Oct 5-7 2005.
60.
Tjondronegoro D,
Chen YPP and Pham B (2005),
A Statistical-driven Approach for Automatic Classification of Events
in AFL Video Highlights. In Proc. Twenty-Eighth Australasian
Computer Science Conference (ACSC2005) Newcastle, Australia. CRPIT,
38. Estivill-Castro, V., Ed. ACS. pp209-218, 2005.
59.
An J, Chen YPP
(2005),
Keyword Extraction for Text Categorization ,
Proceedings of The Third International Conference on
Active Media Technology (AMT 2005), Takamatsu, Kagawa, Japan, IEEE,
pp556-561, MAy 19-21, 2005.
58.
Tjondronegoro D,
Chen YPP and Pham B (2005),
Content-based Video Indexing for Sports Applications using
Integrated Multi-Modal Approach , in Proceedings of The 4th
Asia Pacific International Symposium on
Information Technology, Gold Coast, Australia, pp200-203,
Jan. 26-27, 2005.
57.
An J, Chen YPP, Subramaniam C
(2005), Side Chain Conformational
Preferences in Protein Structures
,
The 2005
International Conference on Mathematics and Engineering
Techniques in Medicine and Biological Sciences
(METMBS '05) Monte Carlo Resort, Las Vegas, Nevada, USA.
pp48-52, June 20-23, 2005.
56. Saijanhar A, Hou J,
Chen YPP
(2005), Content
Exploration for e-Learning Using XML Web Services ,
Proceedings of The Third International Conference on
Active Media Technology (AMT 2005)
May 19-21, 2005, Takamatsu, Kagawa, Japan, IEEE,
p266.
55. Chen Q,
Chen YPP,
Zhang C., Zhang S (2005), A Framework
for Merging Inconsistent Beliefs in Security Protocol Analysis,
International Workshop on Data Engineering Issues in E-Commerce
(DEEC2005) in conjunction with ICDE2005 conference Tokyo, Japan, Tokyo, Japan, IEEE, pp112-117,
9 Apr 2005.
54. Prompramote
S, Chen YPP (2005), ANNODA: Tool for integrating
Molecular-biological Annotation Data, in Proceedings of
International Workshop on Biomedical Data Engineering (BMDE2005) in
conjunction with ICDE2005, IEEE,
pp113-120, April 3-4, 2005, Tokyo, Japan.
|
2004 |
Journals:
53.
Tjondronegoro D, Chen YPP and Pham
B
(2004), Integrating Highlights for More Complete Sport Video Summarization
, IEEE Multimedia, Oct-Dec,
pp22-37, 2004.
52. Soon L, Chen YPP and Underwood A (2004), Knowledge Creation in Export Trading ,
Journal of Information & Knowledge Management (JIKM), 3(4):297-316,
2004.
51.
Zhang J, Pham B and Chen YPP (2004), A Fuzzy
Shape Database to Support Conceptual Design , Control
and Cybernetics,
1:141-172, 2004.
Books:
50.
Chen YPP, Editor (2004),
Bioinformatics
2004, Proceedings of the
Second Asia-Pacific Bioinformatics Conference, Vol
29 in the Conferences in Research and Practice in Information
Technology Series, published by the Australian Computer Society, in
Association with the ACM Digital Library, Jan. 2004.
49.
Chen YPP, Editor (2004),
Multimedia Modelling, Proceedings of the
10th International Multimedia Modelling Conference, IEEE CS
Press, 2004.
Lecture Notes in Computer Science/Artificial
Intelligence:
48.
An J, Chen YPP and Keogh E (2004), A
Grid-based Index Method for Time Warping Distance , Web-Age
Information Management, Lecture Notes
in Computer Science,
LNCS Vol 3129,
Springer-Verlag, pp65-75, 2004.
47.
An J, Chen YPP and Xu Q (2004),
Surface
Spatial Index Structure of High-Dimensional Space ,
Intelligent Data Engineering and Automated Learning,
Lecture Notes in Computer
Science, LNCS Vol 3177,
Springer-Verlag, pp272-278, 2004.
Refereed
conference papers:
46. Tjondronegoro D,
Chen YPP and Pham B (2004), The Power of Play-Break for Automatic
Detection and Browsing of Self-consumable Sport Video Highlights
, 6th ACM SIGMM International Workshop on Multimedia
Information Retrieval
(MIR'04), New York, NY USA, in
conjunction with ACM Multimedia, pp267-274,
October 15-16, 2004
.
(Tier A)
44.
Chen Y, Chen YPP and
Zhu J (2004), Real-Time
Gene-Expression Extraction with Fast Classification (FC) Networks ,
Proceedings of The 2004 International Conference on Machine
Learning, Models, Technologies and Applications (MLMTA'04), Las Vegas, Nevada, USA,
pp883-889, June 21-24, 2004.
43.
Tjondronegoro
D, Chen YPP and Pham B (2004),
Classification of Self-Consumable Highlights for Soccer Video
Summaries , Proceedings of The 5th IEEE International Conference on
Multimedia and Expo (ICME2004) The Grand Hotel, Taipei, Taiwan. IEEE CS Press,
June 27th�30th, 2004.
42. Wu ST, Li Y, Xu
Y, Pham B and Chen YPP (2004), Automatic
Pattern-Taxonomy Extraction for Web Mining , IEEE/WIC/ACM WI-2004,
Beijing China, IEEE CS Press, pp242-248, Sep. 20-24 2004.
41. An J and Chen YPP (2004), Concept Learning of Text Documents ,
IEEE/WIC/ACM WI-2004, Sep 20-24 2004, Beijing China, IEEE CS Press,
pp698-701, Sep. 20-24 2004.
40.
Prompramote S, Chen YPP (2004), Rough Set Based Similarity Metrics for Mixed Data Set: A Case
Study of Heart Disease Diagnosis , the 7th
International Conference on Information Technology
(CIT2004) Hyderabad, Andhra Pradesh,
India, Dec. 2004.
39. Goward P and
Chen YPP
(2004), Redesign of a Multimedia
Course to reflect process not product , international conference
E-Learn 2004,
Washington, DC , pp660-665, Nov. 1-5, 2004.
38. Goodman A and
Chen YPP (2004), Maintaining Relevance in
a Rapidly Changing Environment: Evolving a Multimedia Curriculum ,
Proceedings of 3rd Symposium on IT in Education, Kuala Lumpur pp9-13,
Oct. 2004.
|
2003 |
Journals:
37.
Chen YPP (2003), Biomedical
Visualization,
Visual Languages and Computing 14 (4): 295-297,
2003.
36.
Chen YPP (2003),
Data Mining in Bioinformatics, International Journal of
Software Engineering and Knowledge Engineering, 13(6), 2003.
35. Chen YPP (2003),
Bioinformatics
in Asia Pacific,
Asia-Pacific
Biotech News, published by World Scientific,7(3), 2003.
34. Chen YPP and
Colomb BM (2003), Database Technologies for L-system Simulations in Virtual Plant
Applications on Bioinformatics , Knowledge and Information
Systems, 5(3):288-314, 2003. [PDF]
33. Chen YPP and McLachlan G (2003),
Bioinformatics
Research in Australia,
Asia-Pacific Biotech
News, published by World Scientific, 7(3), 2003.
Books:
32.
Chen YPP, Editor (2003),
Bioinformatics
2003, Proceedings of the
First Asia-Pacific Bioinformatics Conference, Vol
19 in the Conferences in Research and Practice in Information
Technology Series, published by the Australian Computer Society, in
Association with the ACM Digital Library,
February 2003.
Book Chapters: Lecture Notes in Computer Science/Artificial
Intelligence:
31 .
Chen YPP (2003), A Hybrid
Framework Using SOM and Fuzzy Theory for Textual Classification in
Data Mining , Modelling with Words, Lecture Notes in
Artificial Intelligence,
J. Lawry, J. Shanahan and A. Ralescu Eds,
Springer-Verlag,
pp153-167, 2003.
30.
Tjondronegoro D, Chen YPP
and Pham B (2003),
Indexing of Goal Segments in Soccer Video for Semantic Retrieval
, Data Mining from Multimedia and Complex Data , C. Djeraba, S. J.
Simoff, and O. R. Zaiane (Eds) Springer Verlag, 2003.
Refereed
conference papers:
29.
Chen YPP (2003), XML-based Multimedia Query Systems ,
Proceedings of the 9th
International Multi-Media Modelling Conference
(MMM'03) Taipei, Taiwan,
pp.365-378. ISBN957-9078-57-2,
7-9
Jan 2003.
28.
Tjondronegoro D, Chen YPP and Pham B (2003),
Sports Video Summarization using Highlights and Play-Breaks,
5th ACM SIGMM International Workshop on
Multimedia Information Retrieval (MIR2003),
Boston, USA, in conjunction with ACM
Multimedia 2003. (Tier
A)
27.
Prompramote S, Chen YPP
and Maire F (2003), Information Management for Microarray Experimental Data , 5th IFAC Symposium on Modelling
and Control in Biomedical Systems, IFAC2003,
Elsevier Science, pp377-382, 2003.
26.
Soon L, Chen YPP and Underwood A (2003),
Explicit Knowledge in Web-based Export Trading , Proceedings of
the AUSWEB 2003,
The Ninth Australian World Wide Web Conference, Gold Coast Queensland Australia,
5 - 9 July 2003.
25.
Lee FS and Chen YPP (2003), BioWebFinder � Searching
Biological Websites , Proceedings of the
APAC'03,
The APAC Conference and Exhibition on Advanced Computing, Grid
Applications and eResearch, Royal
Pines Resort Gold Coast, Queensland Australia, 29 Sep.- 2 Oct. 2003.
|
2002 |
Journals:
24 .Chen YPP,
and Hanan J (2002),
Partial Automation of Database Processing
of Simulation Outputs from L-systems Models of Plant Morphogenesis ,
BioSystems. (Journal of Biological and Information Processing
Sciences) 65(2-3):187-197, 2002.
[pdf]
23.
Tjondronegoro D and Chen YPP (2002),
Content-based Indexing
and Retrieval using MPEG-7 and X-Query in Video Data Management
Systems,
World Wide Web Journal 5(3):207-227,
2002.[pdf]
Refereed
conference papers:
22. Runoiang
B, Chen YPP, Burrage K, Hanan J, Room P, Belward J
(2002),
Derivation of L-system models from measurements of biological
branching structures using genetic algorithms, Proceedings of
the Fifteenth International Conference on Industrial & Engineering
Application of Artificial Intelligence & Expert Systems, June 17-20,
2002. Cairns, Australia, Lecture Notes in Artifical Intelligence,
pp.514-524, Springer-Verlag, 2002.
[PDF]
21. Tjondronegoro
D and Chen YPP (2002), Content-Based Video Data
Management: Key-Segment Extraction, MPEG-7 Summarisation, and XQUERY
Retrieval , Proceedings of International Workshop on Knowledge
Discovery in Multimedia and Complex Data (KDMCD'02) in conjunction
with the Sixth Pacific-Asia Conference on Knowledge Discovery and
Data Mining (PAKDD-02), Taipei Taiwan, pp. 39-49. May 6-8 2002.
20. Zhang
J, Pham B and Chen YPP (2002), Indexing and Retrieval
of Fuzzy Shapes , Fuzzy Logic: a Paradigm for the New Millennium,
Studies in Fuzziness and Soft Computing Volume No. 81, V. Dimitrov
and V. Korotkich, eds., Physica-Verlag, pp240-252, 2002.
19.
Zhang J, Pham B and Chen YPP (2002), Modelling and
Indexing of Fuzzy Complex Shapes , Proceedings of the Sixth IFIP
Working Conference on Visual Database Systems, Brisbane Australia,
pp.401-415, Kluwer Academic Publishers, 2002.
18.
Soon L and Chen YPP (2002), Visualisation of
Web-based Australian Export Trading , Proceedings of the Sixth IFIP
Working Conference on Visual Database Systems
(VDB6) Brisbane, Australia, pp.281-295, Kluwer Academic
Publishers, 2002.
17.
Zhang J, Pham B and Chen YPP (2002), A Fuzzy Genetic
Algorithm for Creative Shape Design , Proceedings of the Fourth
International Symposium on Tools and Methods of Competitive
Engineering. pp.315-329, Wuhan, Hubei, China, 2002.
16.
Li X, and Chen YPP (2002), Automatic Assessment of
e-Businesses , Proceedings of the International Conference on
E-Business 2002, pp. 294-299, Beijing, China,
pp294-299, May 23-26 2002.
15.
Soon L, Chen YPP and Underwood A (2002), A Case Study on Virtual Export Trade Community , Proceedings of
the AUSWEB 2002,
The
Eighth Australian World Wide Web Conference, pp.
211-224, Sunshine Coast Queensland Australia, July 6-10 2002.
|
2001 |
14.
Chen YPP (2001), A Practical Approach for Professional
Development Portfolio . TechTrain2001, Brisbane, Australia, 5 July -
7 July, 2001, .
13.
Gunther P and Chen YPP (2001), A New
Approach To Hybrid SOM Implementations For Text Classification ,
Proceedings of the 10th International IEEE conference on Fuzzy
Systems, IEEE CS Press, pp.968-972, Melbourne December 2-5 2001.
(Tier A)
12.
Zhang J, Pham B and Chen YPP (2001), Fuzzy
Genetic Algorithms Based on Level Interval Algorithm
Proceedings of the 10th International IEEE conference on Fuzzy
Systems, IEEE CS Press. pp.1424-1428, Melbourne December 2-5 2001.
(Tier A)
11.
Zhang J, Pham B and Chen YPP (2001), Fuzzy
Genetic Algorithms with Fuzzy Solutions , Australian Journal of
Intelligent Information Processing Systems, Vol. 7 No. 1/2, pp.
1-10, 2001.
|
2000 |
10.
Chen YPP and Colomb RM (2000),
Querying Recursive Structures Without Recursive Queries ,
the 11th Australian Database Conference, ADC-2000, IEEE CS
Press, Canberra, Australia. pp.21-27, 31 January - 2 February, 2000.
9.
Chen YPP (2000), Generating
Database Representations of L-systems in Virtual Plant Applications
, PhD Thesis, School of Computer Science and Electrical Engineering,
The University of Queensland, 2001.
8. Zhang J, Pham B and
Chen YPP (2000), Indexing and
Information Retrieval of Shape Databases , Fuzzy Logic: a Paradigm
for the New Millennium, Studies in Fuzziness and Soft Computing, V. Dimitrov and V. Korotkich, eds., Physica-Verlag,
2001.
7.
Zhang J, Pham B and Chen YPP (2000), Construction of Fuzzy
Shape Database, in With Fuzzy Logic in the New Millennium, V. Dimitrov and V. Korotkich, Eds., pp. 53-54,
2001.
|
1999 |
6. Chen YPP and Colomb RM (1999) Generic Process Solution in
Database Systems and L-systems for Bioinformatics Research
Proc of The Second International Symposium on Cooperative Database
Systems for Advanced Applications (CODAS'99), Wollongong, Australia,
March 27-28, 1999.
5.
Chen YPP (1999), DML: A Bridge between Database Systems
and L-Systems for Biological Research , The 11th International
Conference on Scientific and Statistical Database Management
(SSDBM'99) ACM SIGMOD and VLDB Endowment, IEEE press, Cleveland, Ohio, USA,
July 28-30 1999. (Tier A)
4.
Chen YPP and Colomb RM (1999), Decision Support in Bioninformatics Research , Proc: The Fifth International
Conference of The International Society for Decision Support Systems
(ISDSS'99), Melbourne, Australia, 20-23 July 1999.
3.
Chen YPP and Colomb RM (1999), Generic Process Solution in
Database Systems and L-systems for Bioinformatics Research , in
Zhang Y., Rusinkiewicz M. and Kambayashi Y. (eds) Cooperative
Databases and Applications�99, Springer-Verlag, pp.328-339.
|
1997-1998 |
2.
Chen YPP and Colomb RM (1998), Design: A Visual Database
Development System in B. Verma, Z. Liu, Z. Sattar, R. Surawski
and J. You (eds.) 2nd IEEE International Conference on
Intelligent Processing Systems (ICIPS'98) Gold Coast, Australia
4-7 August, 1998, IEEE CS Press,
pp.198-202.
1. Colomb RM and
Chen YPP (1997) Use of Partial Functional Dependencies to make
Practical Approximate Translations Among Forms of Propositional
Expert Systems in Sattar A. (ed.) Advanced Topics in
Artificial Intelligence, Lecture Notes in Artificial Intelligence
Vol 1342. Springer-Verlag, pp 167-176, 1997.
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