-
Song Z, Luo R, Yu J, Chen YPP, Yang W (2023) Compact Transformer Tracker
with Correlative Masked Modeling, Proceedings of the 37th AAAI
Conference on Artificial Intelligence, AAAI 2023, 37:2321-2329.
-
SQ Abbas, L Chi, YPP Chen
(2023) Transformed domain convolutional neural network for alzheimer's
disease diagnosis using structural MRI, Pattern Recognition 133, 109031.
-
Tung MH, Chen YPP, Liu CY,
Liao CS (2023) A Fast and More Accurate Seed-and-Extension Density-based
Clustering Algorithm, IEEE Transactions on Knowledge and Data
Engineering.
-
B Yuan, Y Sheng, BK Bao, YPP
Chen, C Xu (2023) Semantic Distance Adversarial Learning for
Text-to-Image Synthesis, IEEE Transactions on Multimedia.
-
P Cheng, Y Chen, M Ding, Z
Chen, S Liu, YPP Chen (2023) Deep Reinforcement Learning for Online
Resource Allocation in IoT Networks: Technology, Development, and Future
Challenges, IEEE Communications Magazine 61 (6), 111-117
-
L Yu, W Xiang, J Fang,
YPP Chen, L Chi (2023) eX-ViT: A Novel explainable vision transformer
for weakly supervised semantic segmentation, Pattern Recognition 142,
109666.
-
W Lan, Y Dong, H Zhang, C
Li, Q Chen, J Liu, J Wang, YPP Chen (2023) Benchmarking of computational
methods for predicting circRNA-disease associations, Briefings in
Bioinformatics 24 (1), bbac613 1 2023
-
T McIntosh, ASM Kayes, YPP
Chen, A Ng, P Watters (2023) Applying staged event-driven access control
to combat ransomware, Computers & Security 128, 103160 2 2023
-
M Luo, Z He, H Cui, YPP
Chen, P Ward (2023) Class activation attention transfer neural networks
for MCI conversion prediction, Computers in Biology and Medicine 156,
106700 1 2023
-
SQ Abbas, L Chi, YPP Chen
(2023) DeepMNF: Deep Multimodal Neuroimaging Framework for Diagnosing
Autism Spectrum Disorder Artificial Intelligence in Medicine 136, 102475
2 2023
-
R Halawani, M Buchert, YPP
Chen (2023) Deep learning exploration of single-cell and spatially
resolved cancer transcriptomics to unravel tumour heterogeneity,
Computers in Biology and Medicine 164, 107274.
-
G Sharma, MAP Chamikara, MB
Chhetri, YPP Chen (2023) SoK: Systematizing Attack Studies in Federated
Learning–From Sparseness to Completeness, Proceedings of the 2023 ACM
Asia Conference on Computer and Communications Security, 579-592
-
McIntosh T, Kayes ASM, Chen YPP, Ng A, and Watters P (2022)
Ransomware
Mitigation in the Modern Era: A Comprehensive Review, Research
Challenges, and Future Directions. ACM Computing Surveys
54(9), Dec 2022 Article No.: 197, 1-36
-
Yu L, Xiang W, Fang J, Chen YPP, Zhu R (2022),
A novel explainable neural network for Alzheimer's disease diagnosis,
Pattern Recognition, 131(2022), 108876.
-
Mohammed YA, Chen YPP (2022)
A blockchain-based application for genomic access and variant discovery
using smart contracts and homomorphic encryption, Future Generation
Computer Systems, 137(Dec): 234-247.
-
Lan W, Wu X, Chen Q, Peng W, Wang J, Chen YPP (2022),
GANLDA: Graph attention network for lncRNA-disease associations
prediction, Neurocomputing, 469:384-393.
-
Naz S, Phan KT, Chen YPP (2022)
A
comprehensive review of federated learning for COVID-19 detection,
International Journal of Intelligent Systems, 37(3): 2371-2392.
-
Lan W, Dong Y, Chen Q, Zheng R, Liu J, Pan Y, Chen YPP (2022),
KGANCDA: predicting circRNA-disease associations based on knowledge
graph attention network, Briefings in Bioinformatics, 23(1):
bbab494.
-
Zhu J, Wang Z, Chen J, Chen YPP, Jiang YG (2022)
Balanced Contrastive Learning for Long-Tailed Visual Recognition, Proceedings of the IEEE Conference on Computer Vision and Pattern
Recognition (CVPR2022), 2022, 6908-6917.
-
Song Z, Yu J, Chen Y-PP, Yang W (2022)
Transformer Tracking with Cyclic Shifting Window Attention,
Proceedings of the IEEE Conference on Computer Vision and Pattern
Recognition (CVPR2022), 2022, 8791-8800.
-
Lee CY, Chen YPP (2021),
New Insights into Drug Repurposing for COVID-19
Using Deep Learning, IEEE Transactions on Neural Networks and
Learning Systems, 32(11):4770-4780.
-
Yang B, Ran W, Wang L, Lu H, Chen YPP (2021)
Multi-Classes and Motion
Properties for Concurrent Visual SLAM in Dynamic Environments,
IEEE Transactions on
Multimedia, 24: 3947-3960.
-
Rehouma R, Buchert M, Chen YPP (2021)
Machine
Learning for Medical Imaging based COVID19 Detection and Diagnosis.
Int J Intell Syst. 2021; 36:5085-5115.
-
CY Lee and YPP Chen (2021),
Prediction of Drug Adverse Events using Deep Learning in Pharmaceutical
Discovery, Briefings in Bioinformatics, 22(2):1884–1901.
-
Tang R, Yu Z, Ma Y, Wu Y, Chen YPP, Wong L, Li J (2021)
Genetic source completeness of HIV-1 circulating recombinant forms
(CRFs) predicted by multi-label learning, Bioinformatics,
1-9. 2021.
-
Rahmani M, Chen YPP (2021)
Tracking
neutrophil migration in zebrafish model using multi-channel feature
learning. IEEE Journal of Biomedical and Health Informatics.
PP:1-9. 2021.
-
CY Lee and YPP Chen (2021),
Prediction of Drug Adverse Events using Deep Learning in Pharmaceutical
Discovery, Briefings in Bioinformatics (In Press).
-
Chen Q, Lai D, Lan W, Wu X,
Chen B, Chen YPP, Wang J (2021)
ILDMSF: Inferring Associations between Long non-coding RNA and Disease
Based on Multi-similarity Fusion, IEEE/ACM Transactions on
Computational Biology and Bioinformatics (In Press).
-
Chaudhary C, Goyal
P, Prasad DN , and Chen YPP (2020)
Enhancing the quality of Image
Tagging using a Visio-Textual Knowledge Base, IEEE Transactions on
Multimedia, 22(4):897-911.
- M Abukari and YPP Chen
(2020), Ensuring privacy and security of genomic data and functionalities,
Briefings in Bioinformatics,
21(2): 511–526.
- Chaudhary C, Goyal P,
Goyal N, and Chen YPP (2020)
Image Retrieval for
Complex Queries Using Knowledge Embedding, ACM Transactions on
Multimedia Computing Communications and Applications 16(1):1-23,
March 2020.
-
N Amin, A McGrath, YPP Chen (2019),
Evaluation
of Deep Learning in non-coding RNA Classification, Nature Machine
Intelligence, 1, (May 2019), 246–256.
-
HF Yang, YPP Chen (2019)
Representation Learning and Empirical Mode Decomposition for Wind Speed
Forecasting Method, Artificial Intelligence,
277(2019):103176.
-
M Abukari and YPP Chen
(2019), Ensuring
privacy and security of genomic data and functionalities, Briefings
in Bioinformatics
(In press).
-
CY Lee and YPP Chen
(2019), Machine
learning on adverse drug reactions for pharmacovigilance, Drug
Discovery Today, 24(7): 1332-1343.
-
HF
Yang, TS Dillon, E Chang, YPP Chen (2019) Optimized
Configuration of Exponential Smoothing and Learning Machine for Traffic
Flow Forecasting, IEEE
Transactions on Industrial Informatics, 15(1):
23-34.
-
J Cheng, YPP Chen, M Li, YG
Jiang (2019), TC-GAN: Triangle Cycle-Consistent GANs for Face
Frontalization with Facial Features Preserved, ACM MM2019.
-
Anees A,
Chen YPP (2018),
Discriminative binary feature learning and quantization in biometric key
generation, Pattern Recognition, 77(2018): 289-305.
-
Kourfariotis L.T.,
Chen YPP, Stothard P, Hayes BJ (2018)
Variance explained by whole genome sequence variants in coding and
regulatory genome annotations for six dairy traits, BMC
Genomics, (2018) 19:237.
-
Chiu JKH, Dillon
T, Chen YPP (2018), Large-Scale
Frequent Stem Pattern Mining in RNA Families, Journal of
Theoretical Biology, 455, 14 October 2018, 131-139.
-
Ma CY, Chen
YPP,
Berger B, Liao CS (2017), Identification
of Protein Complexes by Integrating Multiple Alignment of Protein
Interaction Networks, Bioinformatics
(2017) 33 (11):
1681-1688.
-
Yang HF, Dillon T, Chen
YPP (2017), Optimized
Structure of the Traffic Flow Forecasting Model with a Deep Learning
Approach, IEEE
Transactions on Neural Networks and Learning Systems,
28(10):2371-2381, 2017.
-
Wang T, Chen
YPP,
Macleod IM, Pryce JE, Goddard EG, Hayes BJ (2017), Application
of a Bayesian non-linear Model Hybrid Scheme to Sequence Data for
Genomic Prediction and QTL Mapping, BMC
Genomics,
18(618):1-23, 2017.
-
Chiu JKH, Chen
YPP (2017), A
Comprehensive Study of RNA Secondary Structure Alignment Algorithms, Briefings
in Bioinformatics, 18(2):
291-305,
2017.
-
Begley S, Zhen H, Chen
YPP (2016), PaMeCo
Join: A Parallel Main Memory Compact Hash Join, Information
Systems, 58:105-125,
2016.
-
Yang SX, Zhen H, Chen
YPP (2016), Workload-based
Ordering of Multi-dimensional Data, IEEE
Transactions on Knowledge and Data Engineering,
28(3):831-844, 2016.
-
Chen Q, Chen
YPP,
Zhang C (2016), Interval-Based
Similarity for Classifying Conserved RNA Secondary Structures, IEEE
Intelligent Systems, 31(3):78-85,
2016.
-
Wang T, Chen
YPP,
Bowman P, Goddard M, Hayes B (2016), A
hybrid expectation maximisation and MCMC sampling algorithm to
implement Bayesian mixture model based genomic prediction and QTL
mapping, BMC
Genomics,
17(1): 1-21, 2016.
-
Chiu JKH, Chen
YPP (2015), Pairwise
RNA Secondary Structure Alignment with Conserved Stem Pattern, Bioinformatics, 31(24):3914-3921,
2015.
-
Rajasekaran R, Chen
YPP (2015), Potential
Therapeutic Targets and Role of Technology in Developing Novel
Antileishmanial Drugs, Drug
Discovery Today, 20(8):
958-968, 2015.
-
Chiu JKH, Chen
YPP (2015), Efficient
conversion of RNA pseudoknots to knot-free structures using a graphical
model, IEEE
Transactions on Biomedical Engineering,
62(5), 1265-1271, 2015.
-
Kourfariotis L, Chen YPP,
Chamberlian A, Vanderjagt C, Hayes B (2015), A
catalogue of novel bovine long noncoding RNA across 18 tissues, PLoS
ONE,
10(10): e0141225. doi:10.1371/journal.pone.0141225, 2015.
-
Kalyaanamoorthy S, Chen
YPP (2014), A
steered molecular dynamics mediated hit discovery for histone
deacetylases, Physical
Chemistry Chemical Physics, 16(8),
3777-3791, 2014.
-
Zhu W, Chen
YPP (2014) Computational
developments in microRNA-regulated protein-protein interactions, BMC
Systems Biology,
2014, 8:14.
-
Kourfariotis L., Chen
YPP, Sunduimijid B, Hayes BJ (2014) Regulatory
and coding genome regions are enriched for trait associated variants in
dairy and beef cattle, BMC
Genomics, 15:436,
2014.
-
Liu Q, Chen
YPP,
Li J (2014), k-Partite
Cliques of Protein Interactions: A Novel Subgraph Topology for
Functional Coherence Analysis on PPI Networks, Journal
of Theoretical Biology,
340:146–154, 2014.
-
Mazin P, Xiong J, Liu X, Yan Z, Zhang X, Li M, He L, Somel M, Yuan Y, Chen
YPP,
Li N, Hu Y, Fu N, Ning Z, Zeng R, Yang H, Chen W, Gelfand M and
Khaitovich P (2013), Widespread
splicing changes in human brain development and aging, Molecular
Systems Biology,9:633,
2013.
-
Yuan Y, Yang L, Shi M, Lu D, Lou H, Chen
YPP,
Jin L, Xu S (2013), Identification
of Well-Differentiated Gene Expressions between Han Chinese and Japanese
Using Genome-Wide Microarray Data Analysis, Journal
of Medical Genetics,
50(8):534-42, 2013.
-
Kalyaanamoorthy S, Chen
YPP (2013), Ligand
release mechanisms and channels in histone deacetylases. Journal
of Computational Chemistry 34(26):
2270-2283, 2013.
-
Cheng SC, Cheng KY, Chen
YPP (2013), GHT-Based
Associative Memory Learning and Its Application to Human Action
Detection and Classification, Pattern
Recognition,
46(11):3117–3128, 2013.
-
Chen Q, Chen
YPP (2012), Discovering
Inhibition Pathways for Protein Kinases. IEEE
Intelligent Systems,
27(5):19-26, 2012.
-
Begley S, Zhen H, Chen
YPP (2012),
“MCJoin:
A memory-constrained join for column-based main-memory databases”,
Proceedings of the ACM SIGMOD 39th International Conference on
Management of Data, SIGMOD
2012,
121-132. Scottsdale, Arizona, USA, 20-24 May 2012.
-
Yuan Y, Chen
YPP, Boyd-Kirkup
J, Khaitovich P and Somel M (2012), Accelerated
aging-related transcriptome changes in the female prefrontal cortex, Aging
Cell, 11(5):894-901,
2012.
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-
[AE]
Associate Editor for the IEEE Transactions on Neural Networks and Learning Systems (TNNLS)
-
[AE]
Associate Editor for the IEEE Transactions on Multimedia (T-MM)
-
[ARC COE] Member of the
College of Experts of the Australian Research Council
-
[ERA2018] Excellence in Research for Australia 2018 (ERA2018) Research Evaluation Committees (REC) of the ARC.
-
[ACM SIG MM] ACM SIG
Multimedia Vice Chair (2021-2023)
-
[AE]
Associate Editor for the Journal of Research and Practice in
Information Technology (JRPIT)
-
[AE] Associate
Editor for the International Journal of Intelligent Computing in Medical
Sciences and Image Processing (IC-MED）
-
[Editor-in-Chief]
Current Bioinformatics
(CBIO)
-
[SC-Chair] STEERING COMMITTEE CHAIR (FOUNDER) of the
Asia-Pacific Bioinformatics Conference,
(since 2003)
-
[SC-Chair]
STEERING COMMITTEE CHAIR of the
International Multimedia
Modelling Conference, (since 2003)
-
[Conference Co-Chair]
Third International Workshop on Conceptual Modelling for Life Sciences
Applications (CMLSA2010),
November 1-4, 2010 Vancouver, BC, Canada.
-
[Conference Chair]
The Bioinformatics Australia 2009 (BA2009),
Melbourne, Australia,
29-30 Oct. 2009.
-
[Program Co-Chair] 25th ACM Multimedia
conference (ACM MM2017), 23-27 Oct 2017,
Mountain View, CA USA.
-
[Program Co-Chair] Fifteenth Asia
Pacific Bioinformatics Conference (APBC2017), 16-18 Jan, 2017, Shenzhen,
China.
-
[Program Co-Chair] Fourteenth Asia
Pacific Bioinformatics Conference (APBC2016), 11-13 Jan, 2016, San
Francisco Bay Area, United States.
-
[Program Co-Chair] 27th International
Conference on Genome Informatics (GIW2016), October 3-5, 2016, Shanghai,
China.
-
[Area Chair]
ACM Multimedia conference (ACM
MM2015), 26-30 Oct 2015, Brisbane, Australia.
-
[Area Chair] ACM Multimedia
conference (ACM MM2018), 22 -
26 October 2018, Seoul, Korea.
-
[Australia Liaison] IEEE International Conference on Multimedia and
Expo( ICME 2017), 10-14 Jul
2017,Hong Kong.
-
[PC Member] The Thirty-Eighth AAAI
Conference on Artificial Intelligence (AAAI-24),
Vancouver, British Columbia, from 20-27 February, 2024.
-
[PC
Member] The 21st Pacific-Asia Conference on Knowledge Discovery and Data
Mining (PAKDD 2017), 23-26 May
2017, Jeju, South Korea.
-
[PC
Member] The 19th Pacific-Asia Conference on Knowledge Discovery and Data
Mining (PAKDD 2015),
19-22 May, 2015, Ho Chi Minh City, Vietnam.
-
[PC
Member] 26th International Conference on Database and Expert Systems
Applications (DEXA2015),
Valencia, Spain September 1 - 4, 2015.
-
[PC
Member] The 18th Pacific-Asia Conference on Knowledge Discovery and Data
Mining (PAKDD 2014), 13-16
May, 2014, Tainan, Taiwan.
-
[PC
Member] 18th Annual International Conference on Research in
Computational Molecular Biology (RECOMB
2014), Pittsburgh, Pennsylvania, April 2-5, 2014.
-
[PC
Member] 25th International Conference on Database and Expert Systems
Applications (DEXA2014), September 1-5, 2014 in Munich, Germany.
-
[PC
Member] The 13th Pacific Rim International Conference on Artificial
Intelligence (PRICAI-2014),
Gold Coast, Queensland, Australia, 1-5 Dec 2014.
-
[PC
Member] The 14th SIAM International Conference on Data Mining (SDM2014),
Philadelphia, Pennsylvania, USA April 24 - 26, 2014.
-
[PC
Member] The Eleventh Asia Pacific Bioinformatics Conference (APBC
2013), Vancouver, BC, Canada 21-23 January 2013.
-
[PC
Member] the 17th Annual International Conference on Research in Computational
Molecular Biology (RECOMB
2013), Beijing, China, April 7-10, 2013.
-
[PC Member]
The 17th Pacific-Asia Conference on Knowledge Discovery and Data Mining
(PAKDD2013), 14-17 April
2013, Gold Coast, Australia.
-
[PC Member]
The 13th SIAM International Conference on Data Mining (SDM 2013),
May 02-04, 2013, Austin, TX, USA.
-
[PC Member]
The 20th Annual International Conference on Intelligent Systems for
Molecular Biology (ISMB2012),
15-17 July, Long Beach, California.
-
[PC Member]
The 23rd International Conference on Database and Expert Systems
Applications (DEXA2012), 3-7
September, Vienna, Austria.
-
[PC Member]
The 16th Pacific-Asia Conference on Knowledge Discovery and Data Mining
(PAKDD2012), May 29- 1 June
2012, Kuala Lumpur, Malaysia.
-
[PC Member]
The 12th Pacific Rim International Conference on Artificial Intelligence
(PRICAI2012), 3-7
September, Sarawak, Malaysia.
-
[PC Member]
2012 IEEE/ICME International Conference on
Complex Medical Engineering (CME2012), 1-4 July, Kobe, Japan.
-
[PC Member]
The 8th International Conference on Advanced
Data Mining and Applications (ADMA2012), 15-18 December, Nangjing,
China.
-
[PC Member]
The 24th
International Conference on Data Engineering (ICDE2008), Cancun, Mexico,
April 7-12, 2008
-
[PC Member]
The 19th
International Conference on Pattern Recognition (ICPR 2008), Tampa,
Florida, USA, December 8-11, 2008
-
[PC Member]
The
12th ACM International Conference on Information
and Knowledge Management (CIKM2003), November 3-8 2003, New Orleans, LA,
USA
-
[PC
Member] The 11th
International conference on Intelligent Systems for Molecular Biology
(ISMB2003), Jun 29 - Jul 3, 2003,
Brisbane Australia
|
Recent
ARC Grants
(more
grants and research projects)
