APBC2004 Advanced Program 18-22 Jan, 2004, Dunedin, New Zealand
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Date |
Session |
Time |
Title |
Authors |
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Sunday, 18/Jan |
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18:00-19:30 |
Welcoming - Reception |
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Monday,
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09:00-10:30 |
ACSW Welcome and ACSC Keynote Address |
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10:30 - 11:00 refreshments served in Foyer of Castle Theatre Complex |
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APBC Opening & S1.RNA Secondary Structure Session Chair:
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11:00-11:30 |
RNA secondary structure prediction with simple pseudoknots |
Jitender S. Deogun, Ruben Donis, Olga Komina, Fangrui Ma |
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11:30-12:00 |
Filtering of Ineffective siRNAs and Improved siRNA Design Tool |
Prodence WH Wong, TW Lam, YC Mui, SM Yiu, Marie Lin |
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12:00-12:30 |
Exact Pattern Matching for RNA Secondary Structures |
Ying Xu, Lusheng Wang, Xiaotie Deng |
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12:30 - 14:00 Lunch |
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APBC Plenary Keynote Address |
14:00-15:30 |
“The Future of Bioinformatics” Prof. Philip E. Bourne Session Chair: Phoebe Chen |
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15:30 - 16:00 refreshments served in Foyer of Castle Theatre Complex |
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S2.Recognition Sequences Session Chair:
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16:00-16:30 |
Recognition Sequences in the Restriction Endonucleases. |
Jan C. Biro, Josephine M.K. Biro |
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16:30-17:00 |
Multiple Sequence Alignment using Tabu Search |
Tariq Riaz, Yi Wang, Kuo-Bin Li |
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17:00-17:30 |
Structure-Function Relationship in DNA sequence Recognition by Transcription Factors |
Akinori Sarai, Samuel Selvaraj, Michael M. Gromiha, Hidetoshi Kono | ||
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Tuesday,
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S3.Genome Analysis Session Chair:
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09:00-09:30 |
Constructing Genome Scale Suffix Trees |
A.L. Brown |
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09:30-10:00 |
EMAGEN: An Efficient Approach to Multiple Whole Genome Alignment |
Jitender S. Deogun, Jingyi Yang, Fangrui Ma |
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10:00-10:30 |
Whole-Genome Functional Classification of Genes by Latent Semantic Analysis on Microarray Data |
See-Kiong Ng, Sanjay Padmakar Khadayate, Yew-Soon Ong |
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10:30 - 11:00 refreshments served in Foyer of Castle Theatre Complex |
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S4.Protein Structures and Functions Session Chair:
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11:00-11:30 |
Protein Side-chain Packing: A maximum edge- weight Clique Algorithmic Approach |
Dukka Bahadur K.C., Tatsuya Akutsu, Etsuji Tomita, Tomokazu Seki |
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11:30-12:00 |
THEMATICS is Effective for Homology Model Structures: A Simple Computational Predictor of Functional Information for Proteins |
Ihsan A. Shehadi, Alper Uzun, Leonel F. Murga, Valentin Ilyin, Mary Jo Ondrechen |
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| 12:00-12:30 | Informative 3D Visualization of Multiple Protein Structures | Paulo Lai, Warren Kaplan, W. Bret Church, Raymond K. Wong | ||
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12:30 - 14:00 Lunch break |
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APBC Plenary Keynote Address |
14:00-15:30 |
“ Molecular Imaging and Biomedical Process Modeling ” Prof. David Dagan Feng Session Chair: Phoebe Chen |
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15:30 - 16:00 refreshments served in Foyer of Castle Theatre Complex |
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S5.Interactive Approaches Session Chair:
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16:00-16:30 |
A Dihedral angle database of short sub-sequences for protein structure prediction | Saravanan Dayalan, Savitri Bevinakoppa, Heiko Schroder | |
| 16:30-17:00 | Nonparametric approaches to detecting differentially expressed genes in replicated microarray | Markus Neuhäuser, Fred C. Lam | ||
| 17:00-17:30 | Mega Weaver: A Simple Iterative Approach for BAC Consensus Assembly | Daolong Wang, Mario Lauria, Bo Yuan, Fred A. Wright | ||
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Conference Dinner |
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Wednesday, |
S6.Bio-Pathway and Prediction Session Chair:
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09:00-09:30 |
Transmembrane Region Prediction with Hydropathy Index/Charge Two-Dimensional Trajectories of Stochastic Dynamical Systems |
T. Kaburagi, D. Muramatsu, S. Hashimoto, M. Sasaki, T. Matsumoto |
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09:30-10:00 |
Integrating biopathway databases for large-scale modeling and simulation |
Masao Nagasaki, Satoru Miyano, Atushi Doi, Hiroshi Matsuno |
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10:00-10:30 |
PathwayFinder: Paving the Way Towards Automatic Pathway Extraction |
Daming Yao, Jingbo Wang, Yanmei Lu, Nathan Noble, Huandong Sun, Xiaoyan Zhu, Nan, Lin, Donald G. Payan, Ming Li, Kunbin Qu |
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Short 1.Protein Classification and Pyrosequencing Session Chair:
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09:00-09:15 |
Dispensation Order Generation for Pyrosequencing * |
Mats Carlsson, Nicolas Beldiceanu | |
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09:15-09:30 |
Classification Comparison of Prediction of Solvent Accessibility from Protein Sequences * |
Huiling Chen, Huan-Xiang Zhou, Xiaohua Hu, Illhoi Yoo |
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09:30-09:45 |
A Pathway Editor for Literature-based Knowledge Curation * |
Ken Ichiro Fukuda, Toshihsa Takagi |
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| 09:45-10:00 | Empirical knowledge and genetic algorithms for selection of Amide I frequencies in protein secondary structure prediction * | Joachim A. Hering, Peter R. Innocent, Parvez I. Haris | ||
| 10:00-10:15 | Towards a Theory of Protein Adsorption: Predicting the Adsorption of Proteins on Surfaces via a Piecewise Linear Model * | Dan V. Nicolau Jr. | ||
| 10:15-10:30 | Local prediction approach of protein classification using Probabilistic suffix trees * | Zhaohui Sun, Jitender S. Deogun | ||
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10:30 - 11:00 refreshments served in Foyer of Castle Theatre Complex |
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S7.Virus Analysis Session Chairs: |
11:00-11:30 |
Detecting local symmetry axis in 3-dimensional virus structures |
Jing He, Desh Ranjan, Michael F. Schmid, Wah Chiu |
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11:30-12:00 |
Initial SARS genome data analysis using a bioinformatics platform |
Hong Luo, Jianmin Wu, Ge Gao, Yin Sun, Yujia Chen, Jingchu Luo |
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12:00-12:30 |
Evolution of Relative Synonymous Codon Usage in Human Immunodeficiency Virus Type 1 |
Peter Meintjes, Allen Rodrigo |
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Short 2. Genome Data and Visualisation Session Chair:
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11:00-11:15 |
A rapid method of whole genome visualisation illustrating features in bothcoding and non-coding regions * |
R. Hall, L. Stern |
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11:15-11:30 |
Evolving Genetic Regulatory Networks Using an Artificial Genome * |
Jennifer Hallinan, Janet Wiles |
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11:30 - 11:45 |
Cluster Ensemble and Its Applications in Gene Expression Analysis * |
Xiaohua Hu, Illhoi Yoo |
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| 11:45-12:00 | Advanced Texturing technigs for the Effective Visualization of Neoroanatomy from Diffusion Tensor Imaging Data * | Burkhard Wuensche | ||
| 12:00-12:15 | Measuring Correlation between Microarray Time-series Data using Dominant Spectrum Component * | Lap Kun Yeung, Hong Yan, Lap Keung Szeto, Alan Wee-Chung Liew, Michael Yang, Richard Kong | ||
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12:30-14:00 Lunch Break |
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S8.Bioinformatics Networks Session Chair:
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14:00-14:30 |
Representing Experimental Biological Data in Metabolic Networks |
Tim Dwyer, Hardy Rolletschek, Falk Schreiber |
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14:30-15:00 |
A novel method for protein subcellular localization Based on Boosting and Probabilistic Neural Network |
Jian Guo, Zhirong Sun, Yuanlie Lin |
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| 15:00-15:30 | BRINet: A BioResource Integration Network | Jason E. Sew Hoy, John R. McDonald, Alan F. McCulloch | ||
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S9.Cancer Data and Detection Session Chair:
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14:00-14:30
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Support Vector Machine Approach for Cancer Detection using Amplified Fragment Length Polymorphism (AFLP) Screening Method |
Waiming Kong, Lawrence Tham, Yew Wong, Patrick Tan |
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| 14:30-15:00 | Use of Built-in Features in the Interpretation of High-dimensional Cancer Diagnosis Data | Jinyan Li, Huiqing Liu, Limsoon Wong | ||
| 15:00-15:30 | Using Emerging Pattern Based Projected Clustering and Gene Expression Data for Cancer Detection | Larry T.H. Yu, Fu-lai Chung, Stephen C.F. Chan | ||
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15:30 - 16:00 refreshments served in Foyer of Castle Theatre Complex |
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S10.Microarray and Gene Expression Session Chair: |
16:00-16:30 | An empirical Bayes adjustment to multiple p-values for the detection of differentially expressed genes in microarray experiments |
Somnath Datta and Susmita Datta |
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| 16:30-17:00 | A Novel Feature Selection Method to Improve Classification of Gene Expression Data | Liang Goh, Qun Song, Nikola Kasabov | ||
| 17:00-17:30 | On the Simutaneous Use of Clinical and Microarray Expression Data in the Cluster Analysis of Tissue Samples | G. J. McLaclan, S. Chang, J. Mar, C. Ambroise | ||
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Thursday, |
S11.Discovery and Search Algorithm Session Chair:
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09:00-09:30 | Variable-length Intervals in Homology Search | Abhijit Chattaraj, Hugh E. Williams |
| 09:30-10:00 | Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences | Tun-Wen Pai, Jia-Han Chu, Wei-Yuan Chang, Margaret Dah-Tsyr Chang, Hsiu Ling Tai | ||
| 10:00-10:30 | A Combined Model and a Varied Gibbs Sampling Algorithm Used for Motif Discovery | Xiaoming Wu, Bo Wang, Changxin Song, Jingzhi Cheng | ||
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10:30 - 11:00 refreshments served in Foyer of Castle Theatre Complex |
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S12-1.Phylogenetic Analysis Session Chair: |
11:00-11:30 | An Overview of the Phylogenetics Analysis Library | Matthew Goode, Korbinian Strimmer, Alexei Drummond, Ed Buckler | |
| 11:30-12:00 | Identifying Character Non-Independence in Phylogenetic Data Using Data Mining Techniques | Anne M. Maglia, Jennifer L. Leopold, Venkat Ram Ghatti | ||
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S12-2 Short. Phylogenetic Analysis Session Chair:
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12:00-12:15 | Phylogenetic Trees: An Information Visualisation Perspective * | Savrina Flora Carrizo | |
| 12:15-12:30 | Phylogenetic tree of prokaryotes based on the complete genomes using fractal and correlation analyses * | Zu-Guo Yu, Vo Anh | ||
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APBC2004 Close |
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Any query please check with APBC2004 PC Chair Dr. Phoebe Chen at p.chen@qut.edu.au