GAPK£ºMotif Discovery Using Genetic Algorithm Incorporating Prior Knowledge

by Dianhui Wang and Xi Li, 2009.


The Final Results:

Motif Rank #1
Motif Model Mismatch Score: 0.389717	Information Content: 8.31977
Complexity: 0.0850676	Consensus: CTATATTTAG MAP Score: 2.24147
No. of sites: 17


Position Frequency Matrix 

 	1  2  3  4  5  6  7  8  9  10  

A	0  0  17  5  11  3  7  1  14  3

C	15  0  0  0  0  0  0  0  1  1

G	0  0  0  0  0  0  0  1  2  9

T	2  17  0  12  6  14  10  15  0  4

>Z20656	GGAAAAATAA	0	166	175	0.564909
>extracted09	CAAAATAG	0	89	98	0.522375
>X00371	ccTAAAATAG	0	32	41	0.516985
>M62404	TTAAAAATAA	0	174	183	0.450096
>L36125	CTAAAAATAG	1	34	43	0.439717
>M29660	CTAAAAATAG	1	64	73	0.439717
>M61126	CTAAAAATAG	1	11	20	0.439717
>M84685	CTATATATAA	1	175	184	0.341481
>U18131	CTATATATAA	1	84	93	0.341481
>X12447	CTAAATATAG	1	78	87	0.353672
>X04260	CTAAATATAG	1	55	64	0.353672
>X71910	CTATATTtat	1	132	141	0.309208
>X85744	CTATATTtat	1	134	143	0.309208
>extracted08	CTATATTtat	1	117	126	0.309208
>extracted07	CTATATTtat	1	136	145	0.309208
>X57155	CTATTTTTAG	1	135	144	0.312271
>J04111	CTATTTTTAG	1	140	149	0.312271
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