Current local time and date: Tue Mar 24 12:05:37 2009 MISCLUSTER clustering parameters ##################### Kmers matching threshold:0.8000 Clusters initialization method:2 Forward strand only:false Mismatches allowed:7 Complexity threshold:0.1500 Number of seed sequences: 5 Number of sequences:18 Total sequences length:10552 Average sequences length:586 Command line options: miscluster -f GAL4_YPD.fsa -b yeast_7c.back -z gal4.fore -l 17 -m 7 -o gal4.output -k 2 ##################### Motif rank #1 Motif Score: 1.528609 Complexity: 0.343109 Relative Entropy: 18.602956 bits No. of sites:13 Con : CGGGCTACTCTCCTCCG Deg. Con: CGGGCWACTSTCSTCCG rCon: CGGAGGAGAGTAGCCCG Position Count Matrix 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 A 3 0 1 3 1 4 8 1 3 0 0 3 0 1 0 0 0 C 9 0 1 3 9 2 3 12 0 6 1 4 7 1 10 13 0 G 0 13 11 4 3 3 0 0 0 5 0 3 4 2 0 0 13 T 1 0 0 3 0 4 2 0 10 2 12 3 2 9 3 0 0 >iYGR295C-1 AGGGCTCCTCTACTTCG 1 852 0.8690 >iYML052W CGGCGCACTCTCGCCCG 1 112 0.8621 >TEL15R-2 AGGGCTCCTCTACTTCG 1 275 0.8690 >iYDR544C AGGGCTCCTCTACTTCG 1 244 0.8690 >iYHR091C TGACCTACTTTTTTCCG 1 316 0.8000 >iYBR018C CGCTCAACAGTGCTCCG 1 273 0.8621 >iYBR018C CGGACAACTGTTGACCG 0 186 0.9034 >iYBR018C CGGTCAACAGTTGTCCG 1 186 0.9103 >iYDR008C CGGTCCACTGTGTGCCG 1 503 0.8828 >iYLR080W CGGAGATATCTGCGCCG 1 578 0.7793 >iYLR080W CGGCGGTCTTTCGTCCG 1 559 0.8552 >iYBR019C CGGAAGACTCTCCTCCG 1 264 0.9310 >iYBR019C CGGGCGACAGCCCTCCG 1 246 0.8621 ################################ Motif rank #2 Motif Score: 1.337695 Complexity: 0.790299 Relative Entropy: 16.123367 bits No. of sites:8 Con : TCTACTGCTAAATGCGA Deg. Con: TYWMCTKCKMARYGCGA rCon: TCGCATTTAGCAGTAGA Position Count Matrix 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 A 0 0 3 6 0 0 0 1 0 5 8 4 0 0 0 1 7 C 0 5 0 2 7 1 1 6 0 2 0 0 4 0 8 0 0 G 0 0 1 0 0 0 4 0 3 0 0 3 0 8 0 6 0 T 8 3 4 0 1 7 3 1 5 1 0 1 4 0 0 1 1 >iYGR295C-1 TCTACTTCGAAGCGCGA 1 860 0.9608 >iYMR134W TCAATTGCTAAATGCAT 1 28 0.8235 >TEL15R-2 TCTACTTCGAAGCGCGA 1 283 0.9608 >iYDR544C TCTACTTCGAAGCGCGA 1 252 0.9608 >iYJR044C TTTCCCGCTTAATGCGA 1 268 0.8431 >iYDR008C TTGCCTCATCAATGCGA 1 447 0.8039 >iYLR080W TCAACTGTTAAACGCGA 1 141 0.9412 >iYBR019C TTAACTGCTCATTGCTA 1 200 0.8627 ################################ Motif rank #3 Motif Score: 0.986665 Complexity: 0.276943 Relative Entropy: 18.308143 bits No. of sites:7 Con : GCTCAGCAACGAACAGA Deg. Con: GCKSARCARYGMWCMGA rCon: TCTGTTCGTTGCTGAGC Position Count Matrix 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 A 1 0 0 1 5 3 1 7 4 0 0 4 3 0 3 0 7 C 0 7 1 3 1 0 6 0 1 4 0 3 1 7 3 0 0 G 5 0 2 3 0 4 0 0 2 0 7 0 0 0 1 7 0 T 1 0 4 0 1 0 0 0 0 3 0 0 3 0 0 0 0 >iYGR295C-1 GCTGAGCAACGAACAGA 1 1015 1.0000 >TEL15R-2 GCTGAGCAACGAACAGA 1 438 1.0000 >iYDR544C GCTGAGCAACGAACAGA 1 407 1.0000 >iYBR018C GCTCAACAGTGCTCCGA 1 274 0.9425 >iYBR018C TCCAAAAAGCGCTCGGA 0 199 0.7701 >iYDR008C ACGCTACAATGACCCGA 1 111 0.8391 >iYBR019C GCGCCGCACTGCTCCGA 1 329 0.8736 ################################ Motif rank #4 Motif Score: 0.895308 Complexity: 0.265962 Relative Entropy: 20.225327 bits No. of sites:6 Con : CGGCCCACTCTGGACCG Deg. Con: CGGHMCACWSTSGWCCG rCon: CGGTCCAGAGTGGGCCG Position Count Matrix 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 A 0 0 0 2 2 1 6 0 2 0 0 0 1 2 0 0 0 C 6 0 0 2 2 4 0 6 0 3 1 2 1 1 6 6 0 G 0 6 6 0 1 1 0 0 0 3 0 3 3 1 0 0 6 T 0 0 0 2 1 0 0 0 4 0 5 1 1 2 0 0 0 >iYML052W CGGCGCACTCTCGCCCG 1 112 0.9589 >iYBR018C CGGTCAACAGTTGTCCG 1 186 0.9041 >iYDR008C CGGCACACAGTGGACCG 0 503 0.9726 >iYDR008C CGGTCCACTGTGTGCCG 1 503 0.9589 >iYLR080W CGGATCACTCCGAACCG 1 647 0.9041 >iYBR019C CGGAAGACTCTCCTCCG 1 264 0.9178 ################################ Motif rank #5 Motif Score: 0.846846 Complexity: 0.809869 Relative Entropy: 16.870276 bits No. of sites:7 Con : GGTACGCCAAAAAAGGC Deg. Con: GSTWYGCCRMAWARKGC rCon: GCCTTTTTTGGCGTACC Position Count Matrix 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 A 0 0 0 3 0 0 0 1 4 5 6 3 6 4 1 0 0 C 1 2 0 1 4 1 7 5 0 2 0 0 1 0 0 0 7 G 6 4 0 0 0 6 0 0 2 0 0 1 0 3 4 7 0 T 0 1 7 3 3 0 0 1 1 0 1 3 0 0 2 0 0 >iYGR295C-1 GGTACGCCAAAAAGGGC 1 840 0.9886 >TEL15R-6 CGTTTGCCAAATCAAGC 0 800 0.8409 >TEL15R-2 GGTACGCCAAAAAGGGC 1 263 0.9886 >iYDR544C GGTACGCCAAAAAGGGC 1 232 0.9886 >iYBR018C GCTCTGCATAATAATGC 1 52 0.8409 >iYJR044C GCTTTCCCGCTTAATGC 1 266 0.7727 >iYLR080W GTTTCGCTGCAGAAGGC 1 223 0.8409 ################################ Motif rank #6 Motif Score: 0.565990 Complexity: 0.544807 Relative Entropy: 13.555891 bits No. of sites:6 Con : AGTTTTTCGGAGAATGG Deg. Con: AGWYTTWCKKASMAKGG rCon: CCATTCTCCGAAAAACT Position Count Matrix 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 A 5 1 2 0 0 0 2 0 0 0 5 1 3 5 0 1 0 C 0 0 0 2 1 0 1 5 0 0 1 2 2 0 1 0 0 G 0 5 1 0 0 0 0 1 4 3 0 2 1 1 2 5 6 T 1 0 3 4 5 6 3 0 2 3 0 1 0 0 3 0 0 >iYGR295C-1 TGATTTAGTGAGAATGG 1 135 0.8310 >iYLR397C AAATTTTCTTACAATAG 1 64 0.8451 >iYBR018C AGTCCTTCGGATCACGG 1 172 0.8592 >iYJR044C AGTTTTTCGTAAAGTGG 1 149 0.9296 >iYLR080W AGGTTTACGGACCAGGG 1 286 0.9296 >iYBR019C AGTCTTCCGTCGGAGGG 0 256 0.8451 ################################ Motif rank #7 Motif Score: 0.546411 Complexity: 0.675753 Relative Entropy: 16.755142 bits No. of sites:7 Con : TTCGCCAAAAAGTGCTC Deg. Con: TWCRSYAAAMAGKGYWC rCon: GAGCACTTTTTGGCGAA Position Count Matrix 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 A 0 3 0 2 0 0 6 6 7 4 7 1 0 0 0 3 0 C 0 0 7 0 4 5 1 1 0 3 0 0 0 0 4 0 7 G 0 0 0 5 2 0 0 0 0 0 0 5 3 6 1 0 0 T 7 4 0 0 1 2 0 0 0 0 0 1 4 1 2 4 0 >iYGR295C-1 TACGCCAAAAAGGGCTC 1 842 0.9783 >iYBR057C TTCATCAAACAATGTAC 1 122 0.8478 >TEL15R-2 TACGCCAAAAAGGGCTC 1 265 0.9783 >iYDR544C TACGCCAAAAAGGGCTC 1 234 0.9783 >iYBR018C TTCGCTCAACAGTGCTC 1 271 0.9022 >iYDR008C TTCAGTAAAAATTTTAC 0 633 0.7826 >iYDR008C TTCGGCACACAGTGGAC 0 505 0.8696 ################################ Motif rank #8 Motif Score: 0.447059 Complexity: 0.389451 Relative Entropy: 17.276183 bits No. of sites:10 Con : GCGCGACAATGTACCGA Deg. Con: RSGMVASWRTGYRCCGA rCon: TCGGTACATTGTCGCGC Position Count Matrix 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 A 4 1 0 4 3 9 1 7 5 1 0 1 4 0 0 1 8 C 0 6 1 5 3 0 6 0 1 2 0 3 1 10 10 0 0 G 6 3 7 1 3 1 3 0 4 0 10 1 3 0 0 9 2 T 0 0 2 0 1 0 0 3 0 7 0 5 2 0 0 0 0 >TEL15R-6 ACGAGAAAAAGTGCCGG 1 445 0.8158 >iYML052W GGGCGAGAGTGCGCCGG 0 111 0.8596 >TEL15R-2 GAGGGACAATGTACCAA 0 914 0.8509 >TEL15R-2 ACGAAAGTACGTACCGA 1 514 0.8684 >iYDR544C ACGAAAGTACGTACCGA 1 483 0.8684 >iYBR018C GCTCAACAGTGCTCCGA 1 274 0.9123 >iYDR008C GGTCCACTGTGTGCCGA 1 504 0.8772 >iYDR008C GGCACACAGTGGACCGA 0 502 0.8684 >iYDR008C ACGCTACAATGACCCGA 1 111 0.9035 >iYBR019C GCGCCGCACTGCTCCGA 1 329 0.8596 ################################ Motif rank #9 Motif Score: 0.440483 Complexity: 0.464958 Relative Entropy: 14.274854 bits No. of sites:11 Con : ATGTATTTTGCACCCTG Deg. Con: ABRTWYTKTKSACCMTK rCon: CAGGGTGCAAAATACAT Position Count Matrix 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 A 7 0 5 1 6 0 0 1 0 0 1 9 1 1 4 0 0 C 1 3 0 1 0 5 0 0 1 1 5 0 10 10 4 0 0 G 2 3 5 2 0 0 0 5 0 7 5 0 0 0 1 0 8 T 1 5 1 7 5 6 11 5 10 3 0 2 0 0 2 11 3 >iYGR295C-1 AGATACTGTGCACCATG 1 1064 0.9756 >TEL15R-6 ACGTACTGCGGACCCTG 0 558 0.9024 >iYML052W TTTTTTTTTTGAACCTG 1 178 0.8049 >iYML042W ATGAATTTTTCACCTTT 1 2 0.8618 >iYMR086C-A ATGTATTATGGACCATT 0 84 0.9268 >TEL15R-2 AGATACTGTGCACCATG 1 487 0.9756 >iYDR544C AGATACTGTGCACCATG 1 456 0.9756 >iYBR018C GCGCTTTTTGGACCCTT 1 204 0.8455 >iYBR018C CTATTTTGTGAACACTG 1 148 0.8374 >iYLR080W GCGGTCTTTCGTCCGTG 1 561 0.7561 >iYBR019C ATAGTTTTTTCTCCTTG 0 662 0.8455 ################################ Motif rank #10 Motif Score: 0.332962 Complexity: 0.212988 Relative Entropy: 16.479217 bits No. of sites:4 Con : GGTCGGTCGACGGTGTG Deg. Con: GKTCKKKCGWSKKTGYG rCon: CACACCGTCGACCGACC Position Count Matrix 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 A 0 0 0 1 0 1 0 0 1 3 1 1 0 0 0 0 0 C 0 0 0 3 0 0 0 4 1 0 2 1 0 0 0 2 0 G 4 2 0 0 3 2 1 0 2 0 1 1 3 0 4 0 4 T 0 2 4 0 1 1 3 0 0 1 0 1 1 4 0 2 0 >iYML052W GTTCGGGCGAGAGTGCG 0 115 0.9388 >iYHR091C GGTAGATCAAAGTTGTG 1 54 0.8571 >iYDR008C GTTCGGTCCACTGTGTG 1 500 0.9796 >iYLR080W GGTCTTTCGTCCGTGCG 1 563 0.8980 ################################